Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01743 ATGCTTAAGCGGGATTCGGTTTCATATAACTCGATCATTGATGGTTATGTAAAATATGGTATGATTGCAATGGCCTACAAAGCCATGGCAGATGCGGTAGGCTCGGCCTCGTTTCCTATTGAAGATAAGAAGCCGTCAGAGTCAAAGACAACTTACGCTGATGTCAAGCTTTTCAATCGTTGGACCTTTGACGATATCCAGCTGCATGATATGTCACTCTCTGATTATATCGGAGTGGTACCATCCAAGCATGCAACCTATGTCCCTCATACTGCTGGAAGGTACGCAGTCAAGCGCTTCAGAAAAGCCCAATGTCCCATAGTGGAGAGGCTGACCAATTCACTCATGATGCACGGAAGAAACAATGGCAAGAAAATGATGGCTGTGAGAATTATTAAGCATGCAATGGAAATCATCCATCTGTTGACTGATCTCAACCCCATCCAAGTTATTGTGGATGCAATAGTTAACAGTGGTCCTCGTGAGGATGCCACTCGTATTGGTTCTGCTGGAGTTGTTAGACGTCAAGCTGTGGATATTTCACCACTGCGACGAGTGAATCAAGCTATCTATCTTCTCACAACAGGTGCCCGTGAATCTGCTTTCAGAAACATCAAGACTATTGCAGAATGCTTGGCTGATGAACTCATGAATGCAGCAAAGGGTTCTTCCAACAGCTACGCCATCAAGAAAAAGGACGAGATTGAAAGAGTTGCCAAGGCTAACCGTTGA 732 0.4467 MLKRDSVSYNSIIDGYVKYGMIAMAYKAMADAVGSASFPIEDKKPSESKTTYADVKLFNRWTFDDIQLHDMSLSDYIGVVPSKHATYVPHTAGRYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKMMAVRIIKHAMEIIHLLTDLNPIQVIVDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELMNAAKGSSNSYAIKKKDEIERVAKANR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01743 243 Gene3D Ribosomal protein S7 domain 37 243 IPR036823 -
Pte6g01743 243 ProSitePatterns Ribosomal protein S7 signature. 109 135 IPR020606 GO:0003723|GO:0003735|GO:0006412
Pte6g01743 243 SUPERFAMILY Ribosomal protein S7 56 243 IPR036823 -
Pte6g01743 243 CDD uS7_Eukaryote 56 243 IPR005716 GO:0003735|GO:0006412|GO:0015935
Pte6g01743 243 Pfam Ribosomal protein S7p/S5e 98 243 IPR023798 -
Pte6g01743 243 NCBIfam 30S ribosomal protein S7 55 243 IPR005716 GO:0003735|GO:0006412|GO:0015935
Pte6g01743 243 PANTHER RIBOSOMAL PROTEIN S7 47 243 IPR000235 GO:0006412
Pte6g01743 243 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 17 243 IPR000235 GO:0006412
Pte6g01743 243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Pte6g01743 243 FunFam 40S ribosomal protein S5 40 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01743 Pte-Chr6 34640911 34643847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01743 54 244 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 90.576 1.54e-132 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01743 K02989 - rcu:8285751 363.999