Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01728 ATGGAGCTCGCTCTGAGCTTAGGAGACTCGGCAAAGCCATTCTCGTTTCTTGACAAGGCCACAAAGATACCCAGCAAAGATCATCTTGGCTTTGGCATAGCATTAGATGGTGGCCTTCATTACGCAAAAGCCTCATCAGACAGCAGAGTGATTAGTACGGATACTTTTCAAGCTGGAGATAAATCAAGGGCATTATCCGATCCGCCTCAGCTAGACCTTCTTCCTCTTTCACCCGTTCCTCCTACACGCCAGCCCTCTTCTCATCTTCCTATACCTTGGCTCACAGATGCACTGGCTGTAGCTGAAAGAGCGTCATCGGATAGACTTACTAGAGGCTCTGATGTGAACCGGGCGTCAGCAACGCGCACCGAGGAAGCAGTGGACGATGGTGCGGCACTGTCGTCTCCTAGCAGTGCAGTATTATCATCTCTGCAGATCGATTTTTGTATAGGAAGCAGCGGTGGTAATATCGAACGAGGCAAAAGAGAGCATGAAGTCGATACGGAGAGGGCTAGTTCAAGAACATGGAGCGACGAGGATGAAAATGGCTCCACTAGAAAGAAACTTCGGCTCTCGAAAGAACAGTCTGCCTATCTTGAAGAAAGCTTCAAAGAACACTCCACTCTTAACCCTAAACAAAAATTAGCACTGGCAAAACAGTTGAACCTTCGTCCTCGCCAAGTGGAAGTTTGGTTTCAAAATAGAAGAGCAAGGTGA 717 0.4798 MELALSLGDSAKPFSFLDKATKIPSKDHLGFGIALDGGLHYAKASSDSRVISTDTFQAGDKSRALSDPPQLDLLPLSPVPPTRQPSSHLPIPWLTDALAVAERASSDRLTRGSDVNRASATRTEEAVDDGAALSSPSSAVLSSLQIDFCIGSSGGNIERGKREHEVDTERASSRTWSDEDENGSTRKKLRLSKEQSAYLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01728 238 SMART HOX_1 184 238 IPR001356 GO:0003677
Pte6g01728 238 CDD homeodomain 186 238 IPR001356 GO:0003677
Pte6g01728 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 72 238 - -
Pte6g01728 238 MobiDBLite consensus disorder prediction 73 87 - -
Pte6g01728 238 FunFam Homeobox-leucine zipper protein HAT22 190 236 - -
Pte6g01728 238 Gene3D - 192 238 - -
Pte6g01728 238 Pfam Homeodomain 186 238 IPR001356 GO:0003677
Pte6g01728 238 SUPERFAMILY Homeodomain-like 174 238 IPR009057 -
Pte6g01728 238 MobiDBLite consensus disorder prediction 59 90 - -
Pte6g01728 238 MobiDBLite consensus disorder prediction 157 191 - -
Pte6g01728 238 MobiDBLite consensus disorder prediction 105 134 - -
Pte6g01728 238 Pfam HD-ZIP protein N terminus 57 143 IPR006712 GO:0005634
Pte6g01728 238 ProSiteProfiles 'Homeobox' domain profile. 182 238 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01728 Pte-Chr6 34474562 34476589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01728 1 238 Homeobox Transcription Factor Family AT5G06710 46.245 8.90e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte6g01728 HD-ZIP_N 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01728 K09338 - qsa:O6P43_005825 228.409