Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01727 ATGGGCGACGAAACGTCTGATGCAATGAACCTGGACTTGAACCTGGGCCCTGGTCCGGAACCAGCTCCAGGTTCAACTCCGAGTGAGTCTATTAACTTGGAGGGCTGGATTGATGAGCCTCCTCATAGATTGCGTGCAGCTATGCGGCTTAGGACAAGGCAAGGGTGGAGATGGAGACAGCTTGATATCTCCTCACAAACTCAAAATATTTCGGTGGAGTTGAATCAGCTTTTAGCCAACTCGAGCACTGCTAGTATGTTACAAGCAGGGGAAGGTAGTGTGCCAGCTGATGGAAGAACAGGAGAGATACATAAAACTTTTGATAGTACAGGTATGGCAGAGGATATGTCATCAGAAAAAAAGGATGATGTTGAAAAGGGAAACAGAGATGACGGAAGCTTTTTCGATTGTAATATTTGTCTTGACCTAGCTAGGGAACCTGTTGTGACTTGTTGTGGTCACTTGTTCTGTTGGCCGTGCCTTTACCGATGGTTACACGTGCATTCTGATGCTAAGGAGTGCCCTGTATGTAAGGGAGAGGTGACAACCAAAAATTTAACTCCTATATATGGTCGTGGGAATCATGCCAGTGAACTAGAGGAGGAGTTCAGTGTTAAAATTCCTCTTCGTCCACAAGCACGGCGTGTTGAGAGCTTAAGGCAAACCATTCAGAGGAATTTGTTTGCATTTCCAGTGGAAGAGATGATTCGCCGCATTGGGAGTAGAATTGACCTGGCTCGAGATGTAGTTCAGCCAAATGATGTTGAAGTCCGCGATTCAGCAGAAAGAACAACTTCATTATTAAATAGGTTTTTGACATCCCGAGGACTGAGACGAGAACAGAGTATGGGTCCACAGCCTAATGAAGTGGTGGATCTAACTCAAGACATCTCTGAGGAAAGCCACCGGGCTCAGCCTATTTTACTGCGGAGAACACAATCACAGAGAACAAGTCTTGCTTCCCTGTTATCTGCACAGAGAACAAATATTAATTCCCTATCATCTGCTTTGACTTCTGCTGAAAGACTAGTCGAGGCATACTTCCGTAGTCACCATCCTGTTAGGAATCAAGAACAGCCTCCACCTGTTGATGATCGAGATTCTTTTTCAAGTGTTGCCGCTGGTATCAATTCAGAGAGTCAAATGGACTCTGCAGTAGAGATTGATTCCCTGATATCTCTGTCAACCTCTTCTTCAAGAAGGCGGAGTGACAGTACCAGAGTATCTGATGCGGATAGTGGAGATTCTCGTGCGCCTAGAAGGAGACGACTGCACTGA 1278 0.4577 MGDETSDAMNLDLNLGPGPEPAPGSTPSESINLEGWIDEPPHRLRAAMRLRTRQGWRWRQLDISSQTQNISVELNQLLANSSTASMLQAGEGSVPADGRTGEIHKTFDSTGMAEDMSSEKKDDVEKGNRDDGSFFDCNICLDLAREPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTTKNLTPIYGRGNHASELEEEFSVKIPLRPQARRVESLRQTIQRNLFAFPVEEMIRRIGSRIDLARDVVQPNDVEVRDSAERTTSLLNRFLTSRGLRREQSMGPQPNEVVDLTQDISEESHRAQPILLRRTQSQRTSLASLLSAQRTNINSLSSALTSAERLVEAYFRSHHPVRNQEQPPPVDDRDSFSSVAAGINSESQMDSAVEIDSLISLSTSSSRRRSDSTRVSDADSGDSRAPRRRRLH* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01727 425 MobiDBLite consensus disorder prediction 351 370 - -
Pte6g01727 425 SMART ring_2 137 177 IPR001841 -
Pte6g01727 425 MobiDBLite consensus disorder prediction 393 425 - -
Pte6g01727 425 MobiDBLite consensus disorder prediction 403 419 - -
Pte6g01727 425 FunFam Zinc finger family protein 118 191 - -
Pte6g01727 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 209 IPR013083 -
Pte6g01727 425 CDD RING-HC_AtRMA-like 135 178 - -
Pte6g01727 425 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
Pte6g01727 425 SUPERFAMILY RING/U-box 132 192 - -
Pte6g01727 425 MobiDBLite consensus disorder prediction 89 127 - -
Pte6g01727 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 117 312 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte6g01727 425 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Pte6g01727 425 MobiDBLite consensus disorder prediction 1 30 - -
Pte6g01727 425 Pfam Zinc finger, C3HC4 type (RING finger) 137 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01727 Pte-Chr6 34467829 34470232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01727 1 416 C3H Transcription Factor Family AT3G58030 50.790 3.80e-133 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01727 K10666 - qsa:O6P43_009466 545.428