Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01719 ATGGACGCTCGCAAGAGAGGGAGGCTGGAAACTGGATTTAACTCCAATGGCGCTTACAAGAAGTCCAAGCAAGGAGAACTGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTGCCGGCTGTCCATTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCCGGTGGATACAATGCTGTGGCTCAGATGATGAATCTATCACCTGCTGCTCCTATGGCATCCAGAAATGTAGGAACAGCAGCTGGAATATTTGTGTCCAACGGATCTGGTGGTCCTGTTAAAACCCGCCTCTGCAACAGACATAATACTGCTGAAGGCTGCAAATTTGGTTCAAGATGCCATTTTGCTCATGGAGAATGGGAACTTGGGAGGACTCTTGGTCCCTCAGCTGATGACCCACGTGCAATGGAGCCTCTTGCAGGCCGTATGGGGGGCCGGGTGGAGCCTCCAGCAACAGGTCCTGCGGTAAGCTTTGGACTCTCATCCACGGCCAAAATTAGTGTTGATGCAGCTTATGCTGGAGCAATTATTGGGAAGGGTGGTGTGAACTCCAAACAGATTAGTCGCCAAACAGGAGCAAAGCTCTCCGTCAGGGAACATGAATCAGATCCTAATCTGAGGCAAATTGAATTGGAAGGCACTTTTGAACAAATCAAAGAAGCTGAAAGCATGGTAAGGGAGTTGATTTCATCTGCAATGATGTCTGCATCTCTGAAACCCTCTGTTGCACCTGGTGCTCCTGCACATCATATGAGCAATTACAAGACCAAGCTGTGTGAAAATTTTGCTAAAGGTTCTTGTACCTTTGGAGATAGATGTCACTTCGCTCATGGAGGTGCTGAATTGAGGAAATCTGGGATTTGA 891 0.4804 MDARKRGRLETGFNSNGAYKKSKQGELDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLSPAAPMASRNVGTAAGIFVSNGSGGPVKTRLCNRHNTAEGCKFGSRCHFAHGEWELGRTLGPSADDPRAMEPLAGRMGGRVEPPATGPAVSFGLSSTAKISVDAAYAGAIIGKGGVNSKQISRQTGAKLSVREHESDPNLRQIELEGTFEQIKEAESMVRELISSAMMSASLKPSVAPGAPAHHMSNYKTKLCENFAKGSCTFGDRCHFAHGGAELRKSGI* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01719 296 SMART kh_6 169 239 IPR004087 GO:0003676
Pte6g01719 296 Pfam KH domain 173 236 IPR004088 GO:0003723
Pte6g01719 296 SUPERFAMILY CCCH zinc finger 36 61 IPR036855 GO:0046872
Pte6g01719 296 SUPERFAMILY CCCH zinc finger 259 292 IPR036855 GO:0046872
Pte6g01719 296 Pfam RNA-binding, Nab2-type zinc finger 40 60 - -
Pte6g01719 296 MobiDBLite consensus disorder prediction 1 20 - -
Pte6g01719 296 PANTHER CCCH ZINC FINGER/TIS11-RELATED 26 154 IPR045877 GO:0003729
Pte6g01719 296 Gene3D K Homology domain, type 1 168 261 IPR036612 GO:0003723
Pte6g01719 296 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 165 248 IPR036612 GO:0003723
Pte6g01719 296 CDD KH-I_AtC3H36_like 173 238 - -
Pte6g01719 296 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Pte6g01719 296 ProSiteProfiles Type-1 KH domain profile. 170 234 - -
Pte6g01719 296 Gene3D - 100 133 - -
Pte6g01719 296 Gene3D - 262 294 - -
Pte6g01719 296 FunFam Zinc finger CCCH domain-containing protein 257 293 - -
Pte6g01719 296 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Pte6g01719 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 128 IPR000571 GO:0046872
Pte6g01719 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Pte6g01719 296 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Pte6g01719 296 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Pte6g01719 296 SMART c3hfinal6 101 128 IPR000571 GO:0046872
Pte6g01719 296 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
Pte6g01719 296 SUPERFAMILY CCCH zinc finger 102 132 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01719 Pte-Chr6 34389507 34392482 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte6g01719 KH_1 6.9e-13 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01719 - - cave:132161843 438.343