Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01714 ATGGAGGATTTCAAGAAAAGAAAACTCGGTGATGGCGACTCTGTGTATGGCAACGGAAACGGAAACGACGGAGTTTCATCACAGGAAGAGCTTCGTTCTTTGCTTGACCCTCTCGCAAAACCTCAGCTTGTTGATCTTCTCGCTAGACTAGGGTCCCAATTTCCATCAATTGCGGAAGAAATTAGAAGTATTGCAAGTGCAGATCCTGTACACAGAAAGCTTTTTGTCCGTGGATTGGCCTGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTGAAGAGCATGGGGAGATTGAAGAAGGGGCTGTAATCCTCGATAAAACAACAGGGAAGTCACGAGGTTATGGTTTCATCACCTATAAAAATATGGAATCAACTCAACAGGCTCTGAGGGCACCTAACAAATTGATTGATGGAAGAATGGCTGTATGTAATCTAGCTTGTGAGGGTCTATCTGGAGCAAGTGGTACTCCTGATCTTGCCCAACGGAAGCTATATATAGGTAACCTATCACCGGAGGTCACAAGTGAGATACTGCTCAAATTTTTTGAGAGGCATGGTCAAATAGAAGAAGGTTCTGTTGCCTATGACAAAGATACAAATGATTCTCGTGGTTTTGGGTTTGTGACATACAAGTCTGCGGAAGCTGCAAAGAAAGCAATAGATGATCCACATAAGATCCTTGGAGGGAGGAATATAAATGTGAAATTTGCGGATACCAACAAGAGTAAAACAGTGCAGACACAGATGCCTTCAGCAGCATTGGTTCCAATGCCCGGCGGATATTCTCAACCTGGAAAAGCACACGTCAGTGCAGCTCCCGTTGGCTATGGTTACCCTCAAACTGTGGCACCATACGCCCCATCTTCTTATCCAAGCCCTCCTGCTGCTCCTTCTCCATATGCTGCGCAAGGACAAATTTATGCATCGGGTGCCATCAGAAGAGACCCTGTTGGACTTCCACCTGCACCACCTATGGGAATGGGAAACTACCCGTATTACACTGCGAAACAGTAG 1017 0.4562 MEDFKKRKLGDGDSVYGNGNGNDGVSSQEELRSLLDPLAKPQLVDLLARLGSQFPSIAEEIRSIASADPVHRKLFVRGLAWNTTSETLRAAFEEHGEIEEGAVILDKTTGKSRGYGFITYKNMESTQQALRAPNKLIDGRMAVCNLACEGLSGASGTPDLAQRKLYIGNLSPEVTSEILLKFFERHGQIEEGSVAYDKDTNDSRGFGFVTYKSAEAAKKAIDDPHKILGGRNINVKFADTNKSKTVQTQMPSAALVPMPGGYSQPGKAHVSAAPVGYGYPQTVAPYAPSSYPSPPAAPSPYAAQGQIYASGAIRRDPVGLPPAPPMGMGNYPYYTAKQ* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01714 338 SUPERFAMILY RNA-binding domain, RBD 65 149 IPR035979 GO:0003676
Pte6g01714 338 Gene3D - 64 149 IPR012677 -
Pte6g01714 338 PANTHER GEO13361P1-RELATED 55 150 - -
Pte6g01714 338 CDD RRM2_NsCP33_like 164 238 - -
Pte6g01714 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 140 IPR000504 GO:0003723
Pte6g01714 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 233 IPR000504 GO:0003723
Pte6g01714 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 240 IPR000504 GO:0003723
Pte6g01714 338 Gene3D - 150 256 IPR012677 -
Pte6g01714 338 MobiDBLite consensus disorder prediction 1 23 - -
Pte6g01714 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Pte6g01714 338 SUPERFAMILY RNA-binding domain, RBD 160 254 IPR035979 GO:0003676
Pte6g01714 338 SMART rrm1_1 73 145 IPR000504 GO:0003723
Pte6g01714 338 SMART rrm1_1 164 236 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01714 Pte-Chr6 34359425 34362733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01714 155 331 C2H2 Transcription Factor Family AT2G19380 27.184 2.78e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01714 K12741 - qsa:O6P43_005851 494.197