Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01697 ATGACCGACCCTTACTCCAATCTCTTCACAAGTTTCAAACACAAATCTCTCCACTATTGTCCACCTACACATTCACCGACTCATCCTCAACTCTATCATTCTCAGTACACCTTCATCAACCAGAGCAACTATAGCGCCTTTTTCCAACACCAGCAAGTTACCTGCTCACCTCCATCTCCTCCATTAAGGGAGGCAATCCCACTCTTGAGGCGGAGCCCAAGAAAAACAGAAGATGATCAAGACCACCCAGAACAAGAGGCGCATTCTTCGGGTGTTCCTATGGATGTGGAAGGAAGCATATGCAGCACAGCGAAAGAAGAAGAAAACAAGGATGGTGGTGTGACTGTTGCACTTCACATAGGGTTGCCAAACCCTAGTGCTGCCGAGATGGCCTCTTTGCTATCTTCTTCATCTGAGATCACTGATAAAGATCATGGTGATGTTTCTGATTCGGGATTCAAAGGCAGCAGTCTCAACAAGGGTCAGTATTGGATCCCAACCCCTTCTCAGATTCTCATAGGTCCTACACAGTTCTCCTGCCCTGTTTGCTGCAAAACCTTTAACAGATACAACAACATGCAGATGCATATGTGGGGGCACGGGTCACAGTACAGAAAAGGGCCAGAATCTCTGAGAGGAATACAACCAACGGGAATGCTCAGGCTACCTTGCTATTGCTGTGCTCCAGGATGCAGGAACAACGTTGATCATCCGAGAGCTAAACCTCTCAAGGACTTTAGAACTCTTCAAACACATTATAAAAGGAAACATGGGATTAAGCCTTTTATGTGCAGAAAATGTGGCAAGGCTTTTGCAGTGAGAGGGGATTGGAGAACTCATGAGAAGAACTGTGGGAAGCTATGGTATTGTACTTGTGGATCTGATTTTAAGCACAAGAGGTCACTCAAAGACCATATAAAAGCTTTTGGGAGTGGTCATGCAGCATACGTTATTGATGGATTGGAAGACGAAGATGATCATGCATCAGAAGTGGAGCAAGATAATGAGTTCATGCAGTAA 1020 0.4529 MTDPYSNLFTSFKHKSLHYCPPTHSPTHPQLYHSQYTFINQSNYSAFFQHQQVTCSPPSPPLREAIPLLRRSPRKTEDDQDHPEQEAHSSGVPMDVEGSICSTAKEEENKDGGVTVALHIGLPNPSAAEMASLLSSSSEITDKDHGDVSDSGFKGSSLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGIQPTGMLRLPCYCCAPGCRNNVDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIKAFGSGHAAYVIDGLEDEDDHASEVEQDNEFMQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01697 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 282 IPR013087 -
Pte6g01697 339 MobiDBLite consensus disorder prediction 73 88 - -
Pte6g01697 339 SMART c2h2final6 178 200 IPR013087 -
Pte6g01697 339 SMART c2h2final6 262 282 IPR013087 -
Pte6g01697 339 FunFam Zinc finger protein WIP2 231 313 - -
Pte6g01697 339 SUPERFAMILY beta-beta-alpha zinc fingers 174 200 IPR036236 -
Pte6g01697 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Pte6g01697 339 PANTHER ZINC FINGER PROTEIN WIP2 26 334 IPR043584 GO:0003700|GO:0010468
Pte6g01697 339 Gene3D Classic Zinc Finger 177 200 - -
Pte6g01697 339 Gene3D Classic Zinc Finger 220 310 - -
Pte6g01697 339 MobiDBLite consensus disorder prediction 73 96 - -
Pte6g01697 339 SUPERFAMILY beta-beta-alpha zinc fingers 244 282 IPR036236 -
Pte6g01697 339 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01697 Pte-Chr6 34265776 34268514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01697 1 339 C2H2 Transcription Factor Family AT3G57670 61.619 7.29e-139 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte6g01697 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01697 - - jre:108986074 506.138