Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01692 ATGGAGGAAGCTAAGACTAAGAAAGGCTCATCGTCGCTCACTCTGGAACAATTCATTTCCAAAACGACCCCTCTCATCGACTTGGAGAAGGAAGCTGAAATATCAGCCTCCATCAGTTCAGGAGCATCTAGGAAGTTAGATACAGCTCAAAAGAGGGGCTCAGCAATCCTCAATTTGAAGTGCGTCGACGTTCAGACAGGGCTTATGGGAAAGTCTCTTCTCGAGTTTCAATCGACAAAAGGCGATGTTCTCCCTGCTCACAAGTTTGGCACGCATGATGTTGTTGTTTTAAAAGCCAACAAGGCAGATTCAGCATCGCCTGCCCTTGGACAAGGGGTAGTGTACCGTTTGAAGGACTCATCTATTACTGTTGCTTTTGATGATGTACCAGAAGAAGGTTTGAATGTTCCCCTACGACTGGAGAAAGTGGCGAATGAGGTGACATATCGTAGAATGAAGGACACATTGATCCAGTTAAGTAAAGGAGTCCATAAAGGTCCTGCAGCAGATCTTATTCCTATCTTGTTTGGCGAGGTACCACCCTCAGTGTCCAAGAAGGATAGCTCTTTCTCTCCCTTCAACAAGAATCTGGATCATTCTCAGAAAGATGCTGTTTCAAAGGCTCTTTCATCGAAGAATGTATTTTTGCTGCATGGGCCTCCTGGAACTGGAAAAACCACAACAGTTGTTGAAATTATATTGCAAGAAATAAAACGCGGTTCAAAGATTCTTGCTTGTGCCGCCTCAAATATTGCAGTTGACAACATTGTTGAACGCCTTGCTTCACACAGAATTAAGCAGGTGAGGTTGGGGCATCCTGCACGTTTGCTGCCTCAAGTATTGGACAGTGCCCTGGATGCACAGGTGTTACGGGGTGATAATAGTTCCCTTGCAAATGATATACGAAAAGAAATGAAGGCATTAAATGGGAAGCTGCTAAAAGCTAAGGATAAAAGCACGAGACGTGAAATCCAGAAAGAGCTTAGGAGTCTCTCCAAAGAGGAACGTAAAAGGCAACAGCTTGCTGTGACAGATGTTATAAAAAATGCAGATGTCATATTGACAACTTTGATTGGTGCTTTCTCTCGTAAACTTGATAGCACTTCATTTGACTTGGTGATAATTGATGAAGCTGCTCAGGCTCTTGAGATAGCATGTTGGATACCTATGCTGAAAGGTTCAAGGTGTATACTTGCGGGAGACCATCTTCAGCTACCCCCAACCATCCAGAGTGTTGAAGCTGAGAAGAAAGGTTTAGGAAGGACTCTCTTTGAACGTCTGGCAGACATGTATGGTGATGAAGTCACATCTATGCTAACTGTCCAGTACCGAATGCATGAGCTTATCATGGAGTGGTCTTCTAAAGAGCTTTACAGTGGCAAGATAAAAGCTCATCCAAGTGTAGCGGCACATACGCTTCATGATCTTGAGAATGTGAAGAAAAACTCTTCAACCGAACCAACCCTTCTTCTTATAGACACAGCTGGGTGTGACATGGAAGAAAAAAAAGATGAAGAAGATAGTACAATGAATGAGGGTGAAGCTGGGGTTGCTATGGTCCACGCAAAGAGATTGGTAGAAAGCGGAGTGCTAGCTTCTGACATTGGAATTATAACCCCGTATGCTGCACAGGTTGTCTTACTGAAGGTGTTGAGAAGCAATGAGGACAAGTTGAAGGATATGGAAATCTCAACAGTTGACGGATTCCAGGGAAGGGAGAAGGAAGCCATCATAATATCAATGGTTCGATCCAACTCAAAGAGCGAGGTGGGATTTCTGATTGACCGTCGGCGAATGAATGTGGCTGTGACGCGATCAAGAAGACAATGCTGCCTTGTCTGTGATACAGAAACAGTCAGTGGTGATGGGTTTCTAAAGCGATTGGTGGAGTATTTCGAAGAGAATGGTGAGTATCTAAGTGCCTCAGAATATCAGTGA 1938 0.4407 MEEAKTKKGSSSLTLEQFISKTTPLIDLEKEAEISASISSGASRKLDTAQKRGSAILNLKCVDVQTGLMGKSLLEFQSTKGDVLPAHKFGTHDVVVLKANKADSASPALGQGVVYRLKDSSITVAFDDVPEEGLNVPLRLEKVANEVTYRRMKDTLIQLSKGVHKGPAADLIPILFGEVPPSVSKKDSSFSPFNKNLDHSQKDAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEIKRGSKILACAASNIAVDNIVERLASHRIKQVRLGHPARLLPQVLDSALDAQVLRGDNSSLANDIRKEMKALNGKLLKAKDKSTRREIQKELRSLSKEERKRQQLAVTDVIKNADVILTTLIGAFSRKLDSTSFDLVIIDEAAQALEIACWIPMLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADMYGDEVTSMLTVQYRMHELIMEWSSKELYSGKIKAHPSVAAHTLHDLENVKKNSSTEPTLLLIDTAGCDMEEKKDEEDSTMNEGEAGVAMVHAKRLVESGVLASDIGIITPYAAQVVLLKVLRSNEDKLKDMEISTVDGFQGREKEAIIISMVRSNSKSEVGFLIDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLVEYFEENGEYLSASEYQ* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01692 645 NCBIfam IGHMBP2 family helicase 344 640 IPR004483 GO:0003677|GO:0005524
Pte6g01692 645 Pfam AAA domain 197 411 IPR041677 GO:0004386
Pte6g01692 645 CDD SF1_C_Upf1 445 633 IPR047187 -
Pte6g01692 645 CDD DEXXQc_SMUBP2 196 444 - -
Pte6g01692 645 FunFam P-loop containing nucleoside triphosphate hydrolase 443 645 - -
Pte6g01692 645 Gene3D - 41 143 - -
Pte6g01692 645 Gene3D - 20 427 IPR027417 -
Pte6g01692 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 621 IPR027417 -
Pte6g01692 645 Coils Coil 298 334 - -
Pte6g01692 645 FunFam DNA-binding protein SMUBP-2 41 143 - -
Pte6g01692 645 SMART AAA_5 211 429 IPR003593 GO:0016887
Pte6g01692 645 SMART ultradead3 193 444 IPR014001 -
Pte6g01692 645 Pfam AAA domain 420 616 IPR041679 -
Pte6g01692 645 Gene3D - 443 645 IPR027417 -
Pte6g01692 645 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 11 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01692 Pte-Chr6 34211534 34219062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01692 195 380 Core DNA Replication Machinery Family AT1G08840 28.495 4.99e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01692 - K19036 gmx:100810545 1087.79