Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01687 ATGACCAGAGATGGTGGCAATGGTGTATCGGGTAAAAGTCCGGCAGACACTTCTACAAAGTACTCAGATGACAGTATACCAAACAAAACTACTGAGTTTCAGGCTCAAGTGGAAGAAACAAACAATGAAATTAGACACACGAGTACTCTACAAGCTGGGAAATTAAATAAGTGCCTTTCTGTTGGAGATGCCCTACCAAAATGCAGTACATTACCTTCTCATTCTCCTGGAGTGCATCCTAGCACAATGGTTTTGCCACTAGAAATAGCCGAGCAACCTGTTTACGTCAATGCTAAGCAATACCATGGAATTTTGAGACGCAGACAGTCACGGGCCAAGGCTGAATCGGAAAAGAAACTGCAGACACCAGTGCGGAAGCCCTACCTTCATGAATCCCGGCATTTGCATGCAATGAGGAGAGCAAGAGGCTGTGGAGGGCGTTTCCTGAAAACAAATAACCTTGCTACTGCTAATGCCGTGACTGACAAGTATACTGCTTGTTTGGGTGCTAATGCTTCAACTGTCACCCTCAACTCTGCAACTCCTAACTCATATGGAAGTTCCGGCTCTTCCTCTGATTGTCAAAATTTGGTGAATGTGCACAATTTGCATCGGAGACAAGTTCAATACAATATTGCGGATGGCAAACCCAGGTATTCAAATAATCGTGTGGTAGATGATGGAGACTTGTCAATACAGCAGCGTGAAAGACCTCCCTGA 720 0.4472 MTRDGGNGVSGKSPADTSTKYSDDSIPNKTTEFQAQVEETNNEIRHTSTLQAGKLNKCLSVGDALPKCSTLPSHSPGVHPSTMVLPLEIAEQPVYVNAKQYHGILRRRQSRAKAESEKKLQTPVRKPYLHESRHLHAMRRARGCGGRFLKTNNLATANAVTDKYTACLGANASTVTLNSATPNSYGSSGSSSDCQNLVNVHNLHRRQVQYNIADGKPRYSNNRVVDDGDLSIQQRERPP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01687 239 Gene3D - 90 153 - -
Pte6g01687 239 MobiDBLite consensus disorder prediction 11 30 - -
Pte6g01687 239 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 59 201 IPR001289 GO:0003700|GO:0006355
Pte6g01687 239 SMART cbf3 89 151 IPR001289 GO:0003700|GO:0006355
Pte6g01687 239 MobiDBLite consensus disorder prediction 216 239 - -
Pte6g01687 239 ProSitePatterns NF-YA/HAP2 subunit signature. 95 115 IPR018362 GO:0003677|GO:0016602
Pte6g01687 239 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 92 148 IPR001289 GO:0003700|GO:0006355
Pte6g01687 239 MobiDBLite consensus disorder prediction 1 30 - -
Pte6g01687 239 ProSiteProfiles NF-YA/HAP2 family profile. 90 151 IPR001289 GO:0003700|GO:0006355
Pte6g01687 239 PRINTS CCAAT-binding transcription factor subunit B signature 125 148 IPR001289 GO:0003700|GO:0006355
Pte6g01687 239 PRINTS CCAAT-binding transcription factor subunit B signature 93 115 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01687 Pte-Chr6 34181243 34184391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01687 77 149 CCAAT-HAP2 Transcription Factor Family AT1G30500 68.493 1.25e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pte6g01687 CBFB_NFYA 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01687 K08064 - qsa:O6P43_006531 147.132