Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01684 ATGTCCGAAAGACCTTCTGGTGACCGCGGAGCATTTTCCCGTGGATTTGGCAGACCTCGCGGTGATCGTGGAAGAGGTCGCCGCAGACCAGCTCGCCGCGAAGAAGAGGAGAAATGGGTCCCTGTAACAAAGCTTGGACGTCTCGTTAAGGAAGGTAAAATCCGAAGCCTTGAACAGATCTACCTTCACTCACTTCCCATCAAGGAGCACCAGATCATTGATACTCTTATTGGGCCTGCACTCAAGGATGAAGTAATGAAGATCATGCCAGTCCAGAAACAAACCCGTGCCGGGCAAAGAACCCGGTTTAAGGCTTTTGTGGTTGTGGGTGATACTAATGGTCACGTTGGTCTTGGTGTCAAGTGCAGCAAGGAAGTTGCTACTGCCATTCGTGGTGCTATTATTTTAGCTAAACTTTCTGTAATCCCCGTTAGAAGGGGATACTGGGGTAACAAAATCGGCAAGCCTCACACTGTGCCCTGCAAGGTTACTGGAAAGTGTGGGTCTGTGACTGTTAGAATGGTTCCTGCTCCTCGTGGTGCTGGGATTGTTGCTGCCAGGGTTCCGAAGAAGGTGTTACAATTTGCTGGTATTGAGGATGTCTTCACTTCCTCAAGGGGTTCCACCAAGACCTTGGGAAATTTTGTCAAGGCTACATTTGATTGTCTTCTCAAAACTTACGGGTTCCTCACACCTGAGTTCTGGAGGGAGACACGCTTCACCAGGTCACCATTCCAGGAACACACAGACTTGTTGGCCAAACCTACTGCCAAGCTTATTGCAATTGAGGAACCGGATAGGGTTGAAGCTGCTGCTTGA 819 0.4945 MSERPSGDRGAFSRGFGRPRGDRGRGRRRPARREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLIGPALKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTRSPFQEHTDLLAKPTAKLIAIEEPDRVEAAA* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01684 272 MobiDBLite consensus disorder prediction 1 37 - -
Pte6g01684 272 ProSiteProfiles S5 double stranded RNA-binding domain profile. 81 144 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte6g01684 272 ProSitePatterns Ribosomal protein S5 signature. 98 130 IPR018192 -
Pte6g01684 272 SUPERFAMILY dsRNA-binding domain-like 78 146 - -
Pte6g01684 272 Pfam Ribosomal protein S5, N-terminal domain 81 145 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte6g01684 272 FunFam 40S ribosomal protein S2 38 143 - -
Pte6g01684 272 Gene3D - 144 236 IPR014721 -
Pte6g01684 272 FunFam 40S ribosomal protein S2 144 237 - -
Pte6g01684 272 SUPERFAMILY Ribosomal protein S5 domain 2-like 157 237 IPR020568 -
Pte6g01684 272 Pfam Ribosomal protein S5, C-terminal domain 165 237 IPR005324 GO:0003735|GO:0005840|GO:0006412
Pte6g01684 272 NCBIfam 30S ribosomal protein S5 34 241 IPR005711 GO:0003735|GO:0006412|GO:0015935
Pte6g01684 272 PANTHER RIBOSOMAL S SUBUNIT 28 227 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte6g01684 272 Gene3D - 38 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01684 Pte-Chr6 34163355 34165120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01684 34 268 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 86.809 1.63e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01684 K02981 - csav:115709431 462.225