Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01658 ATGGCTGCTGAGGAAGAAACTGTTGCCTCACCTTCTCCAATGGAGACCTCTGTCTCCATTTCTGATAGTCAAAATCCTGGTACTGCTGGTAATACTATTTCTCAACCAGTGGGGCCTATAATTGCTCCTGCTGTTTTACCACCTATTGTTCCAATACCTATTATACCTCCACCTGTTCAGCCACCTCCTATTGCTCCGATTCCTGCAATTCCCACAGCTGCTTCTATTCATCCAGTGGCACCTCTTCCTGTTTACCCTCCTGTTTTTAAGCCACCTGTTGCCCAAAATGGTGAGGTGAGAGGAAGTGATTCAGATTCAGATCAGGATGATTCAGGTCCATCCCGGGTAAATAAGAGCACCAGAGAATATGAGATATCAGAAGAGAGCAGAGTGGTAAGAGAGCGGCAGGAAAAGGCATTACAAGAACTAATGATAAAGAGGCGGGCTGCTGCTCTTGCAGTTCCTACTAATGACATGGCAGTTAGAGCTCGACTCCGCAGACTGGGTGAACCAATAACTCTCTTTGGAGAAAGAGAAATGGAGAGACGGGAAAGGCTGAGAATGATTATGGCAAAGTTGGATGCTGATGGTCAGTTAGAGAAGCTTATGAAAGCTCATGAAGAGGAAGAGGCTGCTGCTTCTGTCACGGGAGATGATGTTGAGGAAGAAATTGTACAGTACCCTTTCTACACTGAAGGATCAAAAGGTCTGTTGGATGCCAGGATTGATATCGCAAAATATTCAATTGCAAGAGCAGCTCTGCGGCTGCAGCGTGCTCAACGAAGAAGGGATGATCCTGATGAAGATGTCGATGCAGAGATGAATTGGGCTCTTAGGCAGGCAGACAATTTGGTTCTTGATTGCAGTGAAATTGGGGATGATCGACCACTTATTGGTTGCTCTTTCTCACCCGATGGAAAGATTCTTGCCACCTGTTCTATTGGTCAAGTTGCTAAATTGTGGACTATGCCTGAAGTTAGAAAGCTTTCGACCCTGAAGGGACATACAGAGCGCCTGACTGATGTTGCTTATTCTCCTACTAACAACCATTTAGCAACTGCCTCTGCAGATCGAACTGCAAGGGTTTGGAACAATGAAGGATTTCTCTTGAATACATTTGAAGGCCATCTTGATCGTCTTGCCCGTGTAGCCTTTCATCCATCAGGGAAATACTTGGGTACCACTAGCTATGACAAAACTTGGAGATTGTGGGACATAGAGACAGGGGAAGAGTTGCTCCTTCAAGAAGGTCACAGTCGTCAAGTATATGGAATAGCTTTTCACCATGATGGCTCATTGGCAGCATCATGCGGACTGGATGCGCTGGCACGTGTCTGGGACCTACGCACTGGAAGAAGTATTCTTGCTTTGGAAGGTCATGTTAAACCGGTTCTTAGCGTTAATTTTTCACCCAATGGTTATCATTTAGCCACTGGTGGTGAAGATAACAGCTGTCGTATTTGGGATTTGAGAAAGAAACAGTCTTTATATGTTATTCCTGCTCATTCAAATCTGATTTCGCAAGTCAAATTCGAACCACAGGAGGGTTACTTTTTGGTAACAGCTTCTTTTGACACCACTGCTAAGGTATGGTCAGCCCGTGATTTCAAGCCTGTGAAGACACTATCTGGTCATGAAGCTAAAGTTACCTCTATGGATATTATAGGAGATGGGAGTTATATAGCTACCGTCTCACACGATCGCACCATAAAACTTTGGAGTAGCAATAATAAGAACGGACAAGCAATGGATGTGGACTGA 1761 0.4486 MAAEEETVASPSPMETSVSISDSQNPGTAGNTISQPVGPIIAPAVLPPIVPIPIIPPPVQPPPIAPIPAIPTAASIHPVAPLPVYPPVFKPPVAQNGEVRGSDSDSDQDDSGPSRVNKSTREYEISEESRVVRERQEKALQELMIKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRERLRMIMAKLDADGQLEKLMKAHEEEEAAASVTGDDVEEEIVQYPFYTEGSKGLLDARIDIAKYSIARAALRLQRAQRRRDDPDEDVDAEMNWALRQADNLVLDCSEIGDDRPLIGCSFSPDGKILATCSIGQVAKLWTMPEVRKLSTLKGHTERLTDVAYSPTNNHLATASADRTARVWNNEGFLLNTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDIETGEELLLQEGHSRQVYGIAFHHDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLSVNFSPNGYHLATGGEDNSCRIWDLRKKQSLYVIPAHSNLISQVKFEPQEGYFLVTASFDTTAKVWSARDFKPVKTLSGHEAKVTSMDIIGDGSYIATVSHDRTIKLWSSNNKNGQAMDVD* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 532 - -
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 414 IPR001680 GO:0005515
Pte6g01658 586 PANTHER WD40 REPEAT PROTEIN 106 575 - -
Pte6g01658 586 MobiDBLite consensus disorder prediction 93 129 - -
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 364 IPR001680 GO:0005515
Pte6g01658 586 Pfam WD domain, G-beta repeat 455 489 IPR001680 GO:0005515
Pte6g01658 586 Pfam WD domain, G-beta repeat 328 364 IPR001680 GO:0005515
Pte6g01658 586 Pfam WD domain, G-beta repeat 537 574 IPR001680 GO:0005515
Pte6g01658 586 Pfam WD domain, G-beta repeat 369 405 IPR001680 GO:0005515
Pte6g01658 586 Pfam WD domain, G-beta repeat 416 447 IPR001680 GO:0005515
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 452 - -
Pte6g01658 586 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Pte6g01658 586 PRINTS G protein beta WD-40 repeat signature 351 365 IPR020472 -
Pte6g01658 586 PRINTS G protein beta WD-40 repeat signature 476 490 IPR020472 -
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 574 - -
Pte6g01658 586 MobiDBLite consensus disorder prediction 1 38 - -
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 410 - -
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 457 491 - -
Pte6g01658 586 MobiDBLite consensus disorder prediction 10 35 - -
Pte6g01658 586 Pfam pre-mRNA processing factor 4 (PRP4) like 161 187 IPR014906 -
Pte6g01658 586 Gene3D - 275 455 IPR015943 GO:0005515
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 541 IPR001680 GO:0005515
Pte6g01658 586 ProSitePatterns Trp-Asp (WD) repeats signature. 392 406 IPR019775 -
Pte6g01658 586 SUPERFAMILY PRP4-like 139 194 IPR036285 -
Pte6g01658 586 MobiDBLite consensus disorder prediction 102 129 - -
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 574 IPR001680 GO:0005515
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 498 IPR001680 GO:0005515
Pte6g01658 586 Gene3D - 129 210 IPR036285 -
Pte6g01658 586 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 417 586 - -
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 364 - -
Pte6g01658 586 SUPERFAMILY WD40 repeat-like 289 573 IPR036322 GO:0005515
Pte6g01658 586 ProSitePatterns Trp-Asp (WD) repeats signature. 476 490 IPR019775 -
Pte6g01658 586 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 456 IPR001680 GO:0005515
Pte6g01658 586 Gene3D - 456 584 IPR015943 GO:0005515
Pte6g01658 586 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Pte6g01658 586 SMART WD40_4 535 574 IPR001680 GO:0005515
Pte6g01658 586 SMART WD40_4 408 447 IPR001680 GO:0005515
Pte6g01658 586 SMART WD40_4 366 405 IPR001680 GO:0005515
Pte6g01658 586 SMART WD40_4 325 364 IPR001680 GO:0005515
Pte6g01658 586 SMART WD40_4 492 532 IPR001680 GO:0005515
Pte6g01658 586 SMART WD40_4 450 489 IPR001680 GO:0005515
Pte6g01658 586 SMART WD40_4 281 322 IPR001680 GO:0005515
Pte6g01658 586 CDD WD40 300 574 - -
Pte6g01658 586 SMART pr04_2 156 209 IPR014906 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01658 Pte-Chr6 33927813 33932402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01658 377 573 U-box Gene Family AT2G33340 23.077 4.73e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01658 K12662 - cave:132161756 818.92