Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01616 ATGCCTTCGAAGACGAAGAAACAATCAAAGTCACAGTCGTCAAGACTGTCTGCTACTGACAGCGGGGCATCTCCTATGTCCAAGCCGGTGCCTCCTAATACAGCTTTAGAATTTAGTCAAGATGATATTTTGTTTTCTCTCGAGGAGGCTTCGAGAATGTATCCTTCTCTTATTGGAAAGTCTGCTTTGATTGGCGAGGTCTGCGACGTGGATTCTGCTTCTAAAGGCTGTAAGATATGGATGTCTGAGTCGTCTATGGTTGCTTCTTCTCTTAAACCCGGTTCCCTTGTCTCGGTATCACTAGCTTCACCTGGGAATGAAAATTTATTCAGCTTCCCACTCAAATCATTAGCTAGCAGACTGAGTACATGTTTGACCATTGATACCAGCCAGAAAATAGATGATCGAGCTGGAAACTACTTTGCCCTTGCAAAAGTTTTCCCTTCCAGTAAGGTTTCAAGGAAAGGAGTACGACTATCTTTGAATCTATCTCAGACCATGGGTTGCCCCACTTTAGGCTCAATAGTGTTCATTCACGCATTAGAACACAACTTTAAACCATTTGAAAATGGAAATTTTCAATATGCAGAAAGCTCTGGACTCATGGTGCACAACTGCAAGGAATTATATCTTACATTTTCTCCAACAAAAATTGGATTAACAGAAAATAGTAATAGCGTTTCTTCCATGAACTTCCATGCTGAAAGTCCTGCCTTCTCAGAAAATGGAGCTACTGCATCTCCCAAAACGCCTTCACACCTGTCTAGACTTGGTTCTCCTAGTACAATTCAGTTAAACTCACCAGCTTCAAAAGTTTCAGCATCAAGTAAGCTTAAAGTAAATGATTCAACTTTTTGTCAAGTTGATGTTGAGGAATCTATGAAAGATGGAAGTGTCAAGAAACTATTGCAGAGTTGTGTTAGTTTATGGTTGAGATCTCGCTATTTGCTCCTTGGGAACTTTGTGAGTGTGCCATTACTTTCAGGATTGTGCATTTTCCAAGTGATAGATGCTAAAGGGGTATCACTGGATAGCCTGAACCAGAATTCTACAAATCAAGGTCCTGAATCTCTTCACTCCAGTGCCGCGGGGGACACTGTAAATGAGGCTTTTGTCATAAACAATGAAACAAAAGTGTATTTATTGTCAACATCTAGGACTGGGTCTGACGAGCCACGTAGTGATTTTTCTAGTACAAATTCAAGATCTAAGGCAGTAAAGGTATGTTTACAGGATAAAACAAAATTGGGCGGTCTATCAAAGGAATATACAACTCTCGTGGATATCATTTCCTCTTCAGTGACAGATGCTTTATCCAGTTTTGGTTTACGCACTACAAAAGGAGTCCTTCTTCGTGGTCCACCTGGAACAGGAAAAACTTCCCTGGCTCGATTATGTGCCCAAGATGCTGGTGTCAATCTTTTCTGTGTAAATGGACCTGAGATTATAAGCCAATACTATGGTGAAAGTGAGCAAGCACTGAATGAGGTTTTTGATTCAGCAAGCCATGCTGCTCCGTCCGTGGTTTTCATTGATGAGTTGGATGCCATTGCACCTGCAAGAAAGGATGGAGGTGAAGAGCTATCTCAGAGAATGGTTGCTACATTATTAAACTTGATGGATGGGATTGGTAGGACAGAAGGACTACTTGTTATCGCTGCCACCAACAGGCCTGATACCATTGACCCTGCACTCAGACGACCTGGAAGATTGGATAAGGAAATTGAAATTGGTGTGCCATCTCCCAAGCAACGACTTGATATACTGCATTCTCTTCTCAGTGAAAAGGAGCACTCTCTTTCAACTGCACAGATCGAACACCTAGCCACTGTGACACATGGTTTTGTTGGGGCTGACCTAGCTGCCCTTTGCAACGAAGCTGCCCTGGTTTGTCTGAGGCGCTATGTCATTGCTAAAAACTCCTGTGGTATACAACGAAACAGCAAGACATCAAGTTCTTGTGAAAATTGCTCTGGTTATCCAACAGAGGGGGCTATGTTTCTGAACGATAAATCAAATAAACCAAGAGACGGTTACAGAAATGAATTTTCGTCCATCTCAGAAATGTCGGTTGCTTCTAACATACCACCTTCTACCTTTCAAAAACAAGCACTGGAAAATACTGAAGATCTGCCTAATGGCTTTGCTGGAGGCTCTATTTTGAAAGTTACCTTTGAAGATTTTGAAAAAGCAAGGATGAAAGTAAGACCAAGTGCTATGAGGGAGGTGATCCTTGAAGTTCCGAAGGTCAAGTGGGAAGATGTTGGGGGCCAAAGGGAGGTAAAAGCACAACTAATGGAAGCTGTAGAATGGCCTCAGAAACACCATGATGCATTCACACGAATTGGGACACGCCCACCAACTGGAATACTGTTGTTTGGGCCTCCAGGATGCAGTAAAACCCTGATGGCACGTGCAGTTGCATCAGAAGCAGGGTTGAATTTTCTTGCAGTAAAGGGTCCAGAACTCTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTAAGGTCTTTGTTCGCAAAAGCAAGGGCCAATGCCCCATCAATAATCTTTTTTGATGAAATAGATGGTCTTGCAATCATCCGTGGGAAAGAAAGTGATGGTGTCTCAGTTTCTGATAGGGTCATGAGTCAACTTCTTGTGGAGTTGGATGGCCTACACCAAAGGCTTAATGTGACTGTAATTGCTGCAACAAATCGACCAGATAAGATCGATCCTGCCCTCTTAAGACCTGGACGCTTTGATCGTCTGCTCTATGTGGGACCTCCAAACAAGTCAGACCGGGAAGAGATATTTCGCATCCACTTGCGTAGGGTTCCATGTAACTCTGATGTTAGCATAAAAGAGCTGGCAAGTTTGACCGATGGATATACTGGAGCTGATATATCATTAATTTGTCGTGAAGCAGCTCTTGCAACGATTGAGGAAAGCCGTGATGCTTCTGAAATAAGAATGCAGCAGTTAAAAACTGGAATCCAACGGGTGCAACCATCACATGTGGAGTCATATGAAGAATTGTCGGGGAAATTTCAAAGACTTGTTCACTCTACTGATAGGAAAAAGGAATTTACTCAGAAGCAACAATCAAGAACATTGAGCTGGTTTACTTTTAGGAAGTTCTTCAATTCTTTGATCCCTGCATCAACTTCCATCAGCCATTTTTAA 3165 0.425 MPSKTKKQSKSQSSRLSATDSGASPMSKPVPPNTALEFSQDDILFSLEEASRMYPSLIGKSALIGEVCDVDSASKGCKIWMSESSMVASSLKPGSLVSVSLASPGNENLFSFPLKSLASRLSTCLTIDTSQKIDDRAGNYFALAKVFPSSKVSRKGVRLSLNLSQTMGCPTLGSIVFIHALEHNFKPFENGNFQYAESSGLMVHNCKELYLTFSPTKIGLTENSNSVSSMNFHAESPAFSENGATASPKTPSHLSRLGSPSTIQLNSPASKVSASSKLKVNDSTFCQVDVEESMKDGSVKKLLQSCVSLWLRSRYLLLGNFVSVPLLSGLCIFQVIDAKGVSLDSLNQNSTNQGPESLHSSAAGDTVNEAFVINNETKVYLLSTSRTGSDEPRSDFSSTNSRSKAVKVCLQDKTKLGGLSKEYTTLVDIISSSVTDALSSFGLRTTKGVLLRGPPGTGKTSLARLCAQDAGVNLFCVNGPEIISQYYGESEQALNEVFDSASHAAPSVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGIGRTEGLLVIAATNRPDTIDPALRRPGRLDKEIEIGVPSPKQRLDILHSLLSEKEHSLSTAQIEHLATVTHGFVGADLAALCNEAALVCLRRYVIAKNSCGIQRNSKTSSSCENCSGYPTEGAMFLNDKSNKPRDGYRNEFSSISEMSVASNIPPSTFQKQALENTEDLPNGFAGGSILKVTFEDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKAQLMEAVEWPQKHHDAFTRIGTRPPTGILLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAIIRGKESDGVSVSDRVMSQLLVELDGLHQRLNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNKSDREEIFRIHLRRVPCNSDVSIKELASLTDGYTGADISLICREAALATIEESRDASEIRMQQLKTGIQRVQPSHVESYEELSGKFQRLVHSTDRKKEFTQKQQSRTLSWFTFRKFFNSLIPASTSISHF* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01616 1054 ProSitePatterns AAA-protein family signature. 892 910 IPR003960 GO:0005524|GO:0016887
Pte6g01616 1054 Pfam AAA+ lid domain 944 989 IPR041569 -
Pte6g01616 1054 Pfam AAA+ lid domain 605 634 IPR041569 -
Pte6g01616 1054 FunFam Putative vesicular transport protein (CDC48) 400 578 - -
Pte6g01616 1054 ProSitePatterns AAA-protein family signature. 549 567 IPR003960 GO:0005524|GO:0016887
Pte6g01616 1054 Gene3D - 580 750 - -
Pte6g01616 1054 Gene3D - 751 922 IPR027417 -
Pte6g01616 1054 FunFam calmodulin-interacting protein 111 isoform X1 747 922 - -
Pte6g01616 1054 Gene3D - 392 578 IPR027417 -
Pte6g01616 1054 CDD RecA-like_CDC48_NLV2_r1-like 415 577 - -
Pte6g01616 1054 SMART AAA_5 445 581 IPR003593 GO:0016887
Pte6g01616 1054 SMART AAA_5 786 924 IPR003593 GO:0016887
Pte6g01616 1054 Gene3D - 923 991 - -
Pte6g01616 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 634 IPR027417 -
Pte6g01616 1054 PANTHER AAA-FAMILY ATPASE 82 1011 - -
Pte6g01616 1054 FunFam spermatogenesis-associated protein 5-like protein 1 923 1005 - -
Pte6g01616 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 748 980 IPR027417 -
Pte6g01616 1054 Pfam ATPase family associated with various cellular activities (AAA) 449 578 IPR003959 GO:0005524|GO:0016887
Pte6g01616 1054 Pfam ATPase family associated with various cellular activities (AAA) 790 921 IPR003959 GO:0005524|GO:0016887
Pte6g01616 1054 MobiDBLite consensus disorder prediction 1 28 - -
Pte6g01616 1054 CDD RecA-like_CDC48_r2-like 761 920 - -
Pte6g01616 1054 FunFam Calmodulin-interacting protein 111 580 750 - -
Pte6g01616 1054 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01616 Pte-Chr6 33570743 33579285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01616 1 1038 Calmodulin-binding Proteins AT3G56690 55.483 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01616 - - qsa:O6P43_006331 1229.54