Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01605 ATGGCAAGTAGCAGAAACACCCACTGGTGTTACAGATGCAGAAGACCATTTCGTTTGAGAGGGAGAGATGTAGTTTGCCCTGCATGTGATGGAGGTTTTATTCAAGAGCTCGATGACATGGTGCATTTTAACCCCGTAGATTTCTTTGGGTTGGACAGCTATGAAGAGCGGGACAGAAGGTTCAGACTTATGGAACCTTTCTCAACATTCATGAGACACAGGCTCACAGATAGGGGCCATGGTCGTGATATCAGGACAAGATCAGATTCTGTTCCTGACCATGGCCCTGGATTTGGTCCTTTGTTGATCTTTGGCGGCCAGATTCCATTTAGATTGTCTGGAAATGGAGGGCTTGAAACCTTCTTTAGTGGCACACCTGGAATTGAAATAACTCAAGGTAATACCGGAGATTATTTTGTTGGTCCTGGACTGGAGGAACTCTTTGAACAGTTCCCTGCCAATGATCGACGAGGCCCTCCTCCAGCATCCAGGTCCTCAATAGATGCAATGCCCACTGTTAAGATCACACAGAGACATCTTCGTGCTGATTCACACTGTCCTGTGTGCCAGGACAAATTTGAATTGGGGTCAGAAGCTAGACAAATGCCATGCAACCATATATATCATTCAGACTGTATTGTTCCGTGGCTGGCACAACATAACTCTTGTCCTGTATGCCGCCAGGAATTGCCGCCACAAGGTTTGAGCAGTGGTCGTAACTCCAATCGTCGTTCTACCAATGGGAGGGAAAGTGGTCAAGGAAGGCGAAATCCTTTCTCCAACCTTTGGCCGTTTCGCTCATCTAGCTCAGGCACTGCCCGGGGCAGAGCAGCTGGAAGCAGCTCACCAACTGTCCATCAGAACAATCATGAAATGGAGTATTCTGGTTGGCCTTTTGATGATTACTGA 909 0.4752 MASSRNTHWCYRCRRPFRLRGRDVVCPACDGGFIQELDDMVHFNPVDFFGLDSYEERDRRFRLMEPFSTFMRHRLTDRGHGRDIRTRSDSVPDHGPGFGPLLIFGGQIPFRLSGNGGLETFFSGTPGIEITQGNTGDYFVGPGLEELFEQFPANDRRGPPPASRSSIDAMPTVKITQRHLRADSHCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLAQHNSCPVCRQELPPQGLSSGRNSNRRSTNGRESGQGRRNPFSNLWPFRSSSSGTARGRAAGSSSPTVHQNNHEMEYSGWPFDDY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01605 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 231 - -
Pte6g01605 302 SMART ring_2 186 226 IPR001841 -
Pte6g01605 302 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Pte6g01605 302 Pfam Ring finger domain 185 227 IPR001841 -
Pte6g01605 302 SUPERFAMILY RING/U-box 166 233 - -
Pte6g01605 302 MobiDBLite consensus disorder prediction 233 291 - -
Pte6g01605 302 FunFam E3 ubiquitin-protein ligase RING1-like 150 233 - -
Pte6g01605 302 MobiDBLite consensus disorder prediction 230 302 - -
Pte6g01605 302 CDD RING-H2_RNF126-like 186 227 - -
Pte6g01605 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 233 IPR013083 -
Pte6g01605 302 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01605 Pte-Chr6 33519664 33523519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01605 121 275 C3H Transcription Factor Family AT5G01980 37.107 7.43e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01605 K11982 - qsu:112031639 482.256