Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01588 ATGAATAGCAGAAAAGAAGAAGAGCGAAATGAGAAGATTATTAGGGGACTTATGAAGCTTCCACCAAATCGACGATGCATCAACTGTAACAGTCTGGGCCCTCAGTATGTGTGTACGAATTTCTGGACTTTCATTTGTATTACATGCAGTGGTATACATCGGGAGTTTACCCATCGTGTGAAATCTGTATCAATGGCAAAGTTCACTTCACAAGAAGTTGAAGCACTTCAAAATGGTGGCAACCAACGGGCAAGAGAGATATATTTGAAAGATTGGGATTTCCAAAGGCAGCGATTACCTGACAGCAGTAATGTTGAGAAGATTAGAGACTTCATCAAGAACGTGTATGTTGTTCAAAGATATACTGGAGGGAAAGACTCTGACAAGCCCCCTAGAGACATCCAGAGCCCTAAAAAACAAGAAGAAACCAGGCGTGCCAGTTCTTATCATTCTTACTCTCAGAGTCCTCCTTATGACTATCAATATGAAGACAGAAGATATGGGAAACCATCTGCTGCACTGTCCAGAAAGCCTGGTTCAGATAGAGGACATTATGAGAGCAAGATGTCTAGCTTTATGTGCAGTCCAGGTCGATTCGCGGACCAGGCTTTTGAGGACAGGTTTGCGAATGATGGATCTGGCCCTAGAATATCTGACCATTCTGGCAGTAGTCATGGTGAACCTTTCAAGTCTGATGTGCCGTCCCCAAACTCCCACAAGGACTATGAGTTTAGTAGTCCATCAAATCAGTCCTCTACAAGTAGTTCAAGCAAAGATGTATGGTCTCACGCAAGAGTTACATCATTGGAAACAAATTCCATGAGAGTTACTGATGGAATTCCCCACCCACAGAGAACCGCATCGTCTGGTAGCTTTGGATCATTGGAGAGCAATTCTTTTTCCCTCAAGTCCTATAATATTTCTTCAGAACCCAAGCATTGTTTGCCAAATTGGTCACAGCCGCTGGGCCTTGCTAGATGTGTCAGTTTGGATCCGCCTAAAGCACCATCTATGCCAGAAACAGTCTTGTCAACTCCATCTATTGATCTCTTCGAGTCTCTTGCTCCCTCCCAGGCTTCGTCAGTAGATGCTTTTCAGCCCTCCTTTTTAGCTGGACAATTTGTGGTTGTAAATCAAAATTGTCAAAGCTCTCAAGCAGCCCCAGTGGACTTCTTTTCTGACATGTCTCACAAGCACTTGACCACAACTGCGAATAAAATTACAGAGGAGTTTGCTGCTCCTAAAAATGATGGATGGGCAACTTTTGACGCACCACAGTCAACAGTATCTACTCCACATGTAGATGTTACTCCAAAGCTGCAACATTGTGTGGCTTTGTCAGTGAAGTTCGATCCATTTCCAGCTACAAATTCCAGTATGCAATCCTCATCAACTGACACCCCTCAGCCAACAATGGCTACTACTGCCCTTATAGAAAGAGATTCAAGACTTCCTATTAGTGATGAATCTTTGCCTGAAAAAAATGATCCATTGTCATTGTTCCACTCAAATTTTGAATTCCTATCATTTGTAAATTCTGGTACTGGTGAACCATCAACAAAATCAAATCCTTGGAATGACTTTCTGCCGAAAGAACATTCTCCTGTTGCTGAGCCATGGAATTCATTTGAAAATGCTAAGGATCACTATTCTGTGGCCAATGATCAGAGTGATCGTAGTATACAAATGAACAGTATGTCTTCAAGTGAAGATCAGCAATTGGATTTTATGTTTTCTGAGGAATTTGACAAGGGCAAGACTCAAAGTTCGAAGTTAAATGGTGAAGTTCCTGATAATCGCTTGCTTTCACACATTATAGCCCCCCCATCTGTGCTTCCTCTGATGGGAGAGACTTGGAAATCACATAACCCATTTGATCTACCATTTCATTCTGATTCAGAGAAAAGCAATACGTTCCTCGACATGAGCTCCTTCCAAGGTGCTTTGCCAAACTCCCATTTGCAGTCATCCTTTGATACTGGTGCTGAACCGTGGTTCTCCCAGACACCTTACATTTCATCTGCAGCACCAGGTGGTTTGACTTTCATTGCTACACAGCCGCCCACTTGTCCGTTCCCGACTGTGCAGTCGCAAGGGCCTGTTGCATCGGTCGGAGGAAATCCATTCGCTTAG 2133 0.4332 MNSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICITCSGIHREFTHRVKSVSMAKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDSSNVEKIRDFIKNVYVVQRYTGGKDSDKPPRDIQSPKKQEETRRASSYHSYSQSPPYDYQYEDRRYGKPSAALSRKPGSDRGHYESKMSSFMCSPGRFADQAFEDRFANDGSGPRISDHSGSSHGEPFKSDVPSPNSHKDYEFSSPSNQSSTSSSSKDVWSHARVTSLETNSMRVTDGIPHPQRTASSGSFGSLESNSFSLKSYNISSEPKHCLPNWSQPLGLARCVSLDPPKAPSMPETVLSTPSIDLFESLAPSQASSVDAFQPSFLAGQFVVVNQNCQSSQAAPVDFFSDMSHKHLTTTANKITEEFAAPKNDGWATFDAPQSTVSTPHVDVTPKLQHCVALSVKFDPFPATNSSMQSSSTDTPQPTMATTALIERDSRLPISDESLPEKNDPLSLFHSNFEFLSFVNSGTGEPSTKSNPWNDFLPKEHSPVAEPWNSFENAKDHYSVANDQSDRSIQMNSMSSSEDQQLDFMFSEEFDKGKTQSSKLNGEVPDNRLLSHIIAPPSVLPLMGETWKSHNPFDLPFHSDSEKSNTFLDMSSFQGALPNSHLQSSFDTGAEPWFSQTPYISSAAPGGLTFIATQPPTCPFPTVQSQGPVASVGGNPFA* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01588 710 MobiDBLite consensus disorder prediction 207 293 - -
Pte6g01588 710 PANTHER ARFGAP/RECO-RELATED 1 710 IPR044820 GO:0005096
Pte6g01588 710 MobiDBLite consensus disorder prediction 125 146 - -
Pte6g01588 710 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Pte6g01588 710 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Pte6g01588 710 CDD ArfGap_AGFG 11 121 - -
Pte6g01588 710 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Pte6g01588 710 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Pte6g01588 710 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Pte6g01588 710 MobiDBLite consensus disorder prediction 122 189 - -
Pte6g01588 710 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Pte6g01588 710 Gene3D Arf GTPase activating protein 1 132 IPR038508 -
Pte6g01588 710 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Pte6g01588 710 MobiDBLite consensus disorder prediction 238 293 - -
Pte6g01588 710 SMART arf_gap_3 11 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01588 Pte-Chr6 33402407 33408645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01588 14 129 C2H2 Transcription Factor Family AT4G05330 34.375 6.38e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01588 K15044 - qsa:O6P43_006248 690.649