Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01548 ATGGACCACTTACGATCAATCTGCACGCTGAAGATTTTCAGAGAGAACCGGGCTCTCAATAGCGTCCACACAAGTTTGTGTCTGTCTTTCGTGGCAATGGAGTTCAGCAGAAATATACCTATTTCCAGTGAATGCCAGCAAGAGCAGCCACTCTCTCATCCTTGTTCCATGTTTTCTAATTCCACAGGAAGTACGCACGACCTGTTCTCTGCTCCAAACACTGAGGAGGATTTGAGCTTGGAATGGCTATCGATTTACGTAGAAGATTGCTTCTCAAACCAAGGAAGCTGTTTCCCAGCGCCTACTTATGTCAATGTTCCCCTGCAAGCTACTATTACAAGTTCTAAACAAGGCTCAGCAGGTACCTTGCAGAAAAGCCAGGACAGCTCAAGCCCTCTCCAAAATTTAAACTTTGTAGTACCAGGTAAGGCCAGAAGCAAAAGAAAAAGGGTTACAACCCCCAAAGTCAACAACTCTTTCTGCACATGGTCAAAGCCACTCCTCAAAGGACATCCCCTTCATGGGACGAGCTCAGACCCTCCTCTTCTAGAACAAGCATATTGGCTGGCTGACAGTGAACTCATTGTTACCAAGCAGAGTGAGACTGTTGAGAGAGATTGTGAACATCCATTATCAACAGAAGCAGCAGCAGAGGAGGTGGGGATGAGCGTTGAGAGTATTAATAAGGACAGTTTCGGCAGCTTGGTGGTTCCCAATGCTGGACTGCAACCAATGCCTAGAAGATGCAGCCATTGCCTTGCTCAGAAAACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACCTTGTGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTGCCAGAGTATAGGCCAGCAAAAAGTCCTACTTTTGTGAGCTACTTGCACTCTAATTCCCACAAGAAAATTATGGAGATGAGAATGGCGCCAGTAGAACATGCAAATCAGAAGCACTATGCTGTGTTATCTGATCATATAAATCCAATCCCTTGA 1005 0.4627 MDHLRSICTLKIFRENRALNSVHTSLCLSFVAMEFSRNIPISSECQQEQPLSHPCSMFSNSTGSTHDLFSAPNTEEDLSLEWLSIYVEDCFSNQGSCFPAPTYVNVPLQATITSSKQGSAGTLQKSQDSSSPLQNLNFVVPGKARSKRKRVTTPKVNNSFCTWSKPLLKGHPLHGTSSDPPLLEQAYWLADSELIVTKQSETVERDCEHPLSTEAAAEEVGMSVESINKDSFGSLVVPNAGLQPMPRRCSHCLAQKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKIMEMRMAPVEHANQKHYAVLSDHINPIP* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01548 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 244 306 - -
Pte6g01548 334 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355|GO:0043565
Pte6g01548 334 SMART GATA_3 243 297 IPR000679 GO:0006355|GO:0043565
Pte6g01548 334 PANTHER GATA TRANSCRIPTION FACTOR 51 316 - -
Pte6g01548 334 Gene3D - 241 316 IPR013088 GO:0006355|GO:0008270
Pte6g01548 334 MobiDBLite consensus disorder prediction 117 136 - -
Pte6g01548 334 ProSiteProfiles GATA-type zinc finger domain profile. 243 279 IPR000679 GO:0006355|GO:0043565
Pte6g01548 334 CDD ZnF_GATA 248 295 IPR000679 GO:0006355|GO:0043565
Pte6g01548 334 Pfam GATA zinc finger 249 283 IPR000679 GO:0006355|GO:0043565
Pte6g01548 334 FunFam GATA transcription factor 240 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01548 Pte-Chr6 33048143 33050072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01548 74 311 C2C2-Gata Transcription Factor Family AT2G45050 38.750 4.16e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte6g01548 GATA 1.7e-15 CL0167