Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01543 ATGGAGGAGCCAAATGTTGTGCACAAAGGAGATGAAATTCTGGACTTGCCTCCAGGATTTAGGTTCCATCCCACAGATGAGGAGGTCATCACATATTATTTGACAGAGAAGGTCATGAATAGTGGCTTCAATGCAATTGCAATTGGAGAAGTTGATTTGAATAAGTGTGAACCTTGGGATTTGCCAAAGAAAGCCAAGATGGGAGAAAGAGAGTGGTTCTTCTTTTGCCAGAAAGATAGAAAATATCCAACTGGCACAAGAACCAACCGAGCGACCGAATCTGGTTACTGGAAGGCTACTGGAAAAGACAAAGAGATCTTCAAAGGAAAAGGTTGCCTGGTTGGGATGAAGAAGACCCTCGTCTTCTACAAGGGAAGAGCTCCAAAAGGAGAGAAAACCAATTGGGTCATGCATGAATTTAGATTGGAAGGCAAATTCGCATGTTACCATCTTCCTAGAGCTGCAAAGGATGAATGGGCAGTCTGCAAGGTTTTCCACAAGAACACTGATACCAAAAAAACCACAGTGCCTGAACTTCTAAGGCTGAATTCCTTTGCTGATGGTTTGCTGGATTGTTCTTCACTTCCACCTCTTACGGATCCTACTTACGCTGACAAGGACAACCCTGGTGGCAATCAATTCAAAGGGACTATAACAGTGTCATCAACAAAATCATCAGATCCTGGATATTGCCTTTCCAACTTCGCAATGACCCATCCATTATCGGTGAAGCAAGAAAATCACAGTAACTTTCAGATGGCAGTCAACAATTATAACACCTTCGGTGCAATTAGTCAAGCCAATCTCACTAACCCATCATTGGGTCCAAGTTTTCCATACCAAGCGATGACTGAGTACCGATCGGGTTATATGCAAGCTGGGAAGAGCAATTATTATACGCCGAAACCCGTCACAGCTATGTCGGCTGGCTTTCCGGGAAGAGATGACGACGCAATTCTTAGATCGTTTCTAGCTAACCATGACATTTGTGGACTAAATGTGCAGCCGTACGCTTCGAATCAGTCTAGGGTGAGTCCGTCACAAGACACTGGACTAAGCAACGACATCAACACGGAGACATCCTCAGTTGTTTCGAAGCAAGACATGGCGAACAACAACACATCATTCGACGTCGACCTGGAGTGTCCATCAGTAATTGGCCCCATGTCAGATTTAGATTGCTTGTGGGATGACTACTGA 1200 0.445 MEEPNVVHKGDEILDLPPGFRFHPTDEEVITYYLTEKVMNSGFNAIAIGEVDLNKCEPWDLPKKAKMGEREWFFFCQKDRKYPTGTRTNRATESGYWKATGKDKEIFKGKGCLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFACYHLPRAAKDEWAVCKVFHKNTDTKKTTVPELLRLNSFADGLLDCSSLPPLTDPTYADKDNPGGNQFKGTITVSSTKSSDPGYCLSNFAMTHPLSVKQENHSNFQMAVNNYNTFGAISQANLTNPSLGPSFPYQAMTEYRSGYMQAGKSNYYTPKPVTAMSAGFPGRDDDAILRSFLANHDICGLNVQPYASNQSRVSPSQDTGLSNDINTETSSVVSKQDMANNNTSFDVDLECPSVIGPMSDLDCLWDDY* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01543 399 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Pte6g01543 399 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Pte6g01543 399 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Pte6g01543 399 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 252 - -
Pte6g01543 399 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Pte6g01543 399 FunFam NAC domain-containing protein 100-like 25 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01543 Pte-Chr6 33013689 33015557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01543 8 271 NAC Transcription Factor Family AT5G18270 57.455 7.98e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte6g01543 NAM 6.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01543 - - aprc:113861501 469.544