Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01542 ATGAGAAATCCTCAATCGAACTTGCCTCCAGGCTTTAGGTTCCACCCCACTGATGAAGAACTCATCCTTCACTACCTTAGAAAGAAGGTGGTCTCCGCTCCTATCCCGGTTTCCATTATTGCAGAGGTTGATATCTACAAATTTGATCCTTGGGATTTGCCAGGTAAGGCCGTGTTTGGAGAAAAAGAGTGGTACTTTTTCAGTCCTAGAGATAGAAAATATCCCAATGGCGTGAGACCAAACAGAGCAGCGGCTTCTGGGTATTGGAAGGCAACTGGTACTGACAAGACCATCGTGGCATCGTTAGGAGGAGGTGAAGGCCAAGAGCATCTTGGTGTGAAGAAGGCTCTTGTGTTCTATAAAGGAAAACCCCCTAAGGGCGTCAAGACGAATTGGATCATGCATGAATATCGCCTCATGGACAACAATAGACCTGTCAAGTTCAAAGATTCTTCCATGAGGCTAGATGATTGGGTACTGTGCCGAATTTACAGGAAATCCAAATATGTTCTGCCACCTACACCAGAAGAAACACTTGCTGCAGTCAGTGACCGAGATCAAGATCATCAGGAACAGTTTGTTAATGATCATAGTACTCTTGTTCCAATTCTTAAACTCTCCCCTGGTGAAGATACACTCGTATCTCAGAACTCACTATCTTTCTCAAACTTATTTGATGCCATGGACTACTCCATGCTGAGTAGCTTCCTCTCTGAAAACCCTTCCAACTCAACACAGTTTGAACCAGCTCCTGAATTACATGGTGGGGTTATGCAGCAGTCTTTTCAAAATAACACAAACAGCTACCTGTTTCAGAAGCTTCCTGAATTGAACAGTCCTTCCCCAATAAACATGGAAAGCGATCTCAAGCGCCATAATACGATAATGGCTGAAGATACGTCGTCGCACCCAGAAAACAAATTCTCGAACTCTTGCGGTTTCATCAACAAGTCTCGCCAAACTGACACACCTCAGTGCAACTTATCGAATCGATCATTGTTGTTCAATCAGCAATTACTTTTGAGTCCTCATCTCAGCTTCCAAGGATAA 1050 0.439 MRNPQSNLPPGFRFHPTDEELILHYLRKKVVSAPIPVSIIAEVDIYKFDPWDLPGKAVFGEKEWYFFSPRDRKYPNGVRPNRAAASGYWKATGTDKTIVASLGGGEGQEHLGVKKALVFYKGKPPKGVKTNWIMHEYRLMDNNRPVKFKDSSMRLDDWVLCRIYRKSKYVLPPTPEETLAAVSDRDQDHQEQFVNDHSTLVPILKLSPGEDTLVSQNSLSFSNLFDAMDYSMLSSFLSENPSNSTQFEPAPELHGGVMQQSFQNNTNSYLFQKLPELNSPSPINMESDLKRHNTIMAEDTSSHPENKFSNSCGFINKSRQTDTPQCNLSNRSLLFNQQLLLSPHLSFQG* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01542 349 SUPERFAMILY NAC domain 5 166 IPR036093 GO:0003677|GO:0006355
Pte6g01542 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 266 - -
Pte6g01542 349 FunFam NAC transcription factor 56 17 170 - -
Pte6g01542 349 Gene3D NAC domain 17 170 IPR036093 GO:0003677|GO:0006355
Pte6g01542 349 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Pte6g01542 349 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01542 Pte-Chr6 33005279 33007170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01542 2 350 NAC Transcription Factor Family AT3G04070 52.101 1.55e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte6g01542 NAM 5.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01542 - - qsa:O6P43_006141 449.129