Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01538 ATGAATGACCTCATGACACAATCCTTCGCAAGCTATGTGGATTTGAAGAAAGCCGCCATGAAAGATTTGGACCTGGAAGCTGGTCTTCCTCCTGGTGACTTAGAGCTGAGATCATCCACTACTAACATGGACAGTGACATGGGTTTGTTCTTGGAAAAGGCGGAGAAGGTGAAAACAGAGATGGCTTCACTCCGCGACACTCTGGCAAGGCTACAACAAGCCAATGAAGAGAGCAAGTCCTTGCACAAGCCTGACGCTTTGAAATCCTTAAGGAACAGAATCAACTCTGACATCATCAATGTGCTGAAGAAGGCGAGGACCATTAGGGCTCAGCTTGAAGAAATGGACAAAGCCAATGCTGCCAACAAAAGGCTCTCTGGCCTAAAAGATGGAACCCCAGCAATCTACAGGACTAGAATTGCTGTCACCAATGGACTCCGCAAGAAACTCAAGGAAATCATGATGGATTTTCAGGGACTGAGGCAGAAGATGATGACCGAATATAAGGATACTGTGGGACGACGTTATTTTACTGTGACAGGTGAGTCCCCAGACGAAGAGGTCATTGAGAAAATCATCTCCAATGGAGCTGAAGAATTTTTGGGTAAGGCTATACAAGAGCATGGGAGAGGAAAAGTGTTAGAAACTGTGGTGGAGATTCAGGACAGGTATGATGCAGCCAAAGAGATTGAGAAGAATCTGCTAGAGCTTCACCAAGTGTTTCTGGACATGGCTGTTATGGTGGAGGCACAAGGTGAGAAGATGGATGACATAGAGCACCATGTACTTCATGCTTCTCACTATGTCCAGGATGGTACTAAGAATCTGCAGGCTGCTAAGCAATACCAAAGGGGGAGCAGGAAGTGGATGTGTGTGGGATTGATACTTCTCCTTCTTATTATTCTTATTATTGTCATCCCCATTATTACTAGTTTCCCTAGCTCTTGA 948 0.4536 MNDLMTQSFASYVDLKKAAMKDLDLEAGLPPGDLELRSSTTNMDSDMGLFLEKAEKVKTEMASLRDTLARLQQANEESKSLHKPDALKSLRNRINSDIINVLKKARTIRAQLEEMDKANAANKRLSGLKDGTPAIYRTRIAVTNGLRKKLKEIMMDFQGLRQKMMTEYKDTVGRRYFTVTGESPDEEVIEKIISNGAEEFLGKAIQEHGRGKVLETVVEIQDRYDAAKEIEKNLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVQDGTKNLQAAKQYQRGSRKWMCVGLILLLLIILIIVIPIITSFPSS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01538 315 Gene3D - 47 175 - -
Pte6g01538 315 CDD SynN 47 204 IPR006011 GO:0016020
Pte6g01538 315 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 217 279 IPR000727 -
Pte6g01538 315 SMART tSNARE_6 212 279 IPR000727 -
Pte6g01538 315 ProSitePatterns Syntaxin / epimorphin family signature. 223 263 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte6g01538 315 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 44 175 - -
Pte6g01538 315 FunFam Syntaxin 132 210 310 - -
Pte6g01538 315 Pfam SNARE domain 254 305 IPR000727 -
Pte6g01538 315 SUPERFAMILY t-snare proteins 45 272 IPR010989 GO:0016020|GO:0016192
Pte6g01538 315 Coils Coil 54 81 - -
Pte6g01538 315 CDD SNARE_syntaxin1-like 216 277 - -
Pte6g01538 315 Pfam Syntaxin 50 252 IPR006011 GO:0016020
Pte6g01538 315 SMART SynN_4 42 169 IPR006011 GO:0016020
Pte6g01538 315 Gene3D - 213 312 - -
Pte6g01538 315 PANTHER SYNTAXIN 57 302 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01538 Pte-Chr6 32968646 32969958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01538 1 316 SNARE and Associated Proteins AT1G08560 68.652 6.14e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01538 K08486 - qsa:O6P43_006135 508.449