Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01529 ACAAAGGAGTGGGGACGAGAAGCTCTGCCAGGGGAACCCAAGTGCATTGTCTGTGGTCGATATGGTGAATATATATGTGACTAGAGTGATGATGATGTCTGTAGCATGGAATGTAAACAGAATTTACTATGTAGTATGCCCAACTCTAAGTTGCCTGTTAATTCCGTCCCTCCGAAAAAGATACCTGACAATGATGAATGCTTTTATGTTAGTGATGGTGGTGGTCAATCAAGATCTCTGTCTTTAGCTATAGAGCAAGCTGATGCATTCAGACGAAAGCTTGACATTCATGTGAAGGGTGTTCTAGATGCTGAACCCATATTATCATTTAATTCGTGTGATCTGCCTGCCAGGCTCCTCCGTAACACGGAAGCTGCAGGTTATGAAATGCCCACACCTGTTCAGATGCAAGCAATTCCTGCTGCTTTAATGGGGAAAAGCCTTCTCGTTACTGCTGATACTGGCTCTGGAAAATCTGCATCTTTTCTGCTTCCAATTATTTTTTGTTGCACAAAATTTCATACTTCTTGCTTATCTGATCAGAAGAAACCGTTAGCAGTGGTTCTAGCACCAACTAGAGAGCTTGCAATACAGATAGAAGTGCATGCCAAGTTGCTAGGAAAGGGATTGCCCTTCAAGACTGCCCTTGTCGTTGGCGGTGATGCAATGGCTGGACAAGTTCACCACATTCAACAAGGAGTGGAACTGTTAGTAGGTACTCCTGGAAGGCTCATTGATATTTTATCCAAGCAGAACATTGAATTAGATGATTTTATGATCTTTGCCGTGGATGAGGTAGACTGCATGCTACAGAGGGGATTTCGTGATCAGGTGTTGCAGATCTTTAGAGCTGTGCCTCAAACACAGGTCATGATGTATTCTGCGACCATTTCTCAAGATATAGAGAAGATGGCTAATTCCATGACGAGAGATATGGTTGTCATCTCTGTTGATAAGTCAAATAGACCAAGTAGGGCAGTGAGGCAGCAGGCTATATGGGTTGATAACTTTGTTGATAAGTCAAATAGACCAAGCAAAAGAAAGCTTTTTGAGATACTGAAAAAAAAGCATTTTATGCCACCTGTTGTGGTGTTTGTGGATTCAAAACTTGGAGCAGATCTCCTTGCTAATGCTGTAACGGTTACAACTGGAACTAAAGCACTTTCTCTTCACGGCGATAAGTCTATGAAGGAAAGGAGGGAAATTATGAGGTCTTTCCTAGTGGGAGAAGTTCTTGTTATAGTTTCAACTGGAATTCTTGGTCGGGGTGTTGATCTGTTGGGTGTTAGACAGGTAATCATTTTTGACTTGCCAAATTCAATCAAGGAGAATGTACATCAGGTTGGGAGGGCATCTAGACTGGGAGAGGAAGGTCAAGCAATAGCTTTTGTGAGCGAGGATAATAAGAATCTGTTCTCGGAGTTTGTTGAAATTCTAAAATCTGCTGGAGCAGTTGTTCCTCGTGAGCTTCTGGATTCG 1479 0.4246 TKEWGREALPGEPKCIVCGRYGEYICDXSDDDVCSMECKQNLLCSMPNSKLPVNSVPPKKIPDNDECFYVSDGGGQSRSLSLAIEQADAFRRKLDIHVKGVLDAEPILSFNSCDLPARLLRNTEAAGYEMPTPVQMQAIPAALMGKSLLVTADTGSGKSASFLLPIIFCCTKFHTSCLSDQKKPLAVVLAPTRELAIQIEVHAKLLGKGLPFKTALVVGGDAMAGQVHHIQQGVELLVGTPGRLIDILSKQNIELDDFMIFAVDEVDCMLQRGFRDQVLQIFRAVPQTQVMMYSATISQDIEKMANSMTRDMVVISVDKSNRPSRAVRQQAIWVDNFVDKSNRPSKRKLFEILKKKHFMPPVVVFVDSKLGADLLANAVTVTTGTKALSLHGDKSMKERREIMRSFLVGEVLVIVSTGILGRGVDLLGVRQVIIFDLPNSIKENVHQVGRASRLGEEGQAIAFVSEDNKNLFSEFVEILKSAGAVVPRELLDS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01529 493 Pfam Helicase conserved C-terminal domain 348 455 IPR001650 -
Pte6g01529 493 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 108 136 IPR014014 GO:0003724
Pte6g01529 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 317 IPR027417 -
Pte6g01529 493 Gene3D - 1 51 - -
Pte6g01529 493 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 493 IPR001650 -
Pte6g01529 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 469 IPR027417 -
Pte6g01529 493 Pfam DEAD/DEAH box helicase 132 303 IPR011545 GO:0003676|GO:0005524
Pte6g01529 493 SMART ultradead3 127 330 IPR014001 -
Pte6g01529 493 Gene3D - 76 315 IPR027417 -
Pte6g01529 493 SMART helicmild6 373 455 IPR001650 -
Pte6g01529 493 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 315 IPR014001 -
Pte6g01529 493 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 103 480 - -
Pte6g01529 493 Gene3D - 316 493 IPR027417 -
Pte6g01529 493 CDD SF2_C_DEAD 327 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01529 Pte-Chr6 32888385 32889871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01529 109 472 Eukaryotic Initiation Factors Gene Family AT3G13920 32.877 5.90e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01529 K19466 - cave:132163386 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte6g01529 6 32888385 32889871 Pte6g01529 6 32888385 32889871 RCT