Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte6g01522 | ATGAACTCATCTACGACATCATCTAATAAGAGCAAAAAGAAGCAGGCAGCAACACCGGCAAAGACACAACAACAGAAAGAAACAACGTGGGGAGGAAGATACCTGGGAGTTAGAAGAAGGCCATGGGGAAGGTATGCAGCTGAGATCAGAGATCCATCGACGAAAGAAAGGCACTGGCTTGGCACATTTGACACTGATGAAGAAGCTGCTTTAGCTTATGACAGAGCCGCTAGGTCCATGCGTGGCTCTCGTGCTCGCACCAACTTCCTATACTCGGATACCCCACCTGGTTGCTCCGTCACCTCCATTGTCTCCCCTGATGAGCAAGCACTCTACCAATATAACCATGAGTTCTCTTCACTCCTTCAAGGATCGGGTAGCCAACAGCCAAACCCCAACAACCAATTCCCGGGATCCCAACTTCCGGGTGGCTACCCAACCGTGTCAGCGGAAGACACATTGGTTTCTTCAGGATTTATTTACCATCTGGAAGCCGACTCCGATATGGTTAGGGTTGCGAACCATTTCAACTGCTTTCACCAACTGCATTATGACAACAACACTGAGCTCCCTCCTTTGCCTTCTTCTGAATTTGACGTGTCAGGTAATTCTTTTGGTGAATCCAACCGGTCGAACTCGGTCTATGATATGGGTGAAGGGGTCTTGAACGATTTTGCGTATTCGGAGCAAACAGGTGGAACAACATCTGCATTTGATTCCTCGTACATGGGAATGAGATTTGATACAAGCGACTACGTGCACAGCCCACTGTTCAGCAGAATGCCACCCGTTTCAGACACAGTGCCAGATAATTTTGACTTGGGACATTCAAATTGTTTCTTCTGA | 846 | 0.4787 | MNSSTTSSNKSKKKQAATPAKTQQQKETTWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTDEEAALAYDRAARSMRGSRARTNFLYSDTPPGCSVTSIVSPDEQALYQYNHEFSSLLQGSGSQQPNPNNQFPGSQLPGGYPTVSAEDTLVSSGFIYHLEADSDMVRVANHFNCFHQLHYDNNTELPPLPSSEFDVSGNSFGESNRSNSVYDMGEGVLNDFAYSEQTGGTTSAFDSSYMGMRFDTSDYVHSPLFSRMPPVSDTVPDNFDLGHSNCFF* | 282 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte6g01522 | 281 | Gene3D | AP2/ERF domain | 32 | 91 | IPR036955 | GO:0003700|GO:0006355 | |
| Pte6g01522 | 281 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
| Pte6g01522 | 281 | MobiDBLite | consensus disorder prediction | 121 | 147 | - | - | |
| Pte6g01522 | 281 | MobiDBLite | consensus disorder prediction | 121 | 142 | - | - | |
| Pte6g01522 | 281 | Pfam | AP2 domain | 34 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
| Pte6g01522 | 281 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 14 | 171 | - | - | |
| Pte6g01522 | 281 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Pte6g01522 | 281 | CDD | AP2 | 33 | 89 | IPR001471 | GO:0003700|GO:0006355 | |
| Pte6g01522 | 281 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
| Pte6g01522 | 281 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
| Pte6g01522 | 281 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
| Pte6g01522 | 281 | FunFam | Ethylene-responsive transcription factor 2 | 33 | 91 | - | - | |
| Pte6g01522 | 281 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Pte6g01522 | 281 | SUPERFAMILY | DNA-binding domain | 33 | 91 | IPR016177 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte6g01522 | Pte-Chr6 | 32847366 | 32848211 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte6g01522 | 6 | 273 | AP2-EREBP Transcription Factor Family | AT5G13910 | 43.284 | 2.13e-51 | 166 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | AP2 or ERF-ERF | Pte6g01522 | AP2 | 1.4e-13 | CL0081 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte6g01522 | K09286 | - | qsa:O6P43_009772 | 281.182 |