Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01516 ATGTCTCCTCTTCCGCGGCTTTTGATTGTTTCTGCTGTATTTTTCACAATTACTCATCATTCGAAAGCTCTCACTCCTTCCATGTCTAGTGATGCATTGTCCCTTCTGAACTTCAAATACTTGGTATCTTCAGACCCTCGAAACCTCTTATCTGGCTGGACGAATCACTCTTCTAACAGTCACTGCCACTGGTTTGGTGTCACCTGCGACAACCCTTTATCCGGAAGAGTCGTTTCCTTGAAGTTAAGCGGACTTCTAGCTGGGAAGTTATCTCATTTTATTGGAAACCTTGACAATCTTCGAACATTATCCCTTCCACACAATATGTTCTCAGGTGAGATCCCAGAGAGTATAGGGAAGCTTCAGCTGCTGGAGGTTCTTGAGCTTCAAGGCAATAATTTCTCTGGAAAGATTCCGACCCAGATAAGTTATCTTATTTCACTCGGTAGGCTTAATCTTTCTAATAATGCTTTGTCAGGTGTGGTACCAAGTCACTTAATTGGGTCTAGAAAATTGAGGATTATTGATTTATCAGATAACCTGCTTTCTGGTCCTATTATAGTGGAAAATTCAAGTAAGTGCGAAATGTTGACTCATTTGAAACTGTCCCGGAATTTTCTGAGTCAAGGGATCCCCTCCGTGATTGGGAAATGTAGAAACTTGAGAACACTTTTGCTGGATGGAAATATCTTGGAAGGTAGAGTCCCAACTGAGATTGGTCAGATTTCCGAACTAAGAATCCTTGATGTCTCTAGAAACAGTCTCACTGAAAGGCTTCCAAGAGAGCTGTCCAATTGCCAGAAATTGTCTGTGCTTGTATTGACTGATTTGGTTGATGATCTCTCCGTTGCTGAGGAAAGCCAGGTGGATAGTCCTAGAGGAGAATTCAATGCGTTTGTAGGAGATATTCCTTCTGAGGTGCTGATGCTGCCTAGTTTACAGATATTGTGGGCACCAAGAGCAAACCTTGGTGGAAGGCTACCTGGTGGCTGGAAGGATTCATGCTCGTTGAGAGTACTCAACTTGGGAAATAATTATATAACCGGTACTGTGCCAGAAAGTATAGGAATGTGTAGGAATCTGAGTTTCTTGGACTTGAGTTCAAACAATTTAGTGGGGTTCCTTCCCCGGCACCTTCAGGTTCCATGTATGGCCTACTTCAATGTTAGCAGGAATAATATATCTGGAGTTCTTAGAGGATTTATGTCTGCAAAATGCGGTGCTGAGAATATCCCTGTTGGACAAGATCCCAAGTTCCTAGACAGAGAGGACTTTATGGTTGCTTCTACTAATATTCCAATTTGGGGTTGTCAGATGAAACGGCTGCTAAGGACAGATTTGGAGAATACTGTTGTTAGTCATGATTTTAGCTGGAATGCATTTGTTGGATCTTTACCATCATTTTTTTGGGCACAAGATGAAGACTTCGCTTCTGCCAGTAATGTCTCTTACAATCTGTTCCTAAATAATAATAATTTCACTGGCACTCTCCCATATAGGCTTGTTTCAAAGTGTGACAGTTTGCGAAGTGTTGCAGTTAATTTGAGTGTGAACCAACTCTCAGGTTGGAGTTCCAACGCATCGCTTCTGGAGTGTTCACAGTTAACGCAGTTTAAAGTGGCAGAAAACCGCATTTCCGGGTCAATTGGTCCTGGTTTCGCTGACTTGATAATGCTCCAAGATCTTGACTTGAGTGGGAACAAACTGTATGGATCTCTACCTGATCAGTTGAAGATGATGAAAAGACTGAAGAGGTTGCTTCTCGGAGGAAACAATTTAACTGGTGAGATTCCAGACCAATTGGATCAGTTGACTTCTCTTCTTGTTCTGAATCTATCCCACAACTCATTAACTGGCTCGTTTCCGATGAGTTTAACTAACGCTTCCAATCTTGAAATTTTGCTGCTGGATCACAATAAACTTCAGGGAAACTTACCTTCGTCTTTATCTTCACTTTCTGCACTCACTAAATTGGATTTTTCTTTCAATAACCTTTCTGGTCACATCCCCAGTTTTCAACATCCTATTGACTGTAATTCCTTCAAAGGGAATAGATACCTCTTTCCTTGCCCAGATACACACCCATTGTCACCCGCTTATCTTCGTGAACCTCTTAAAGTCAAAAAGCAACACAGAGAAAAGAAATTGAAGATATTGGTCATTGTTACAATTGCTTCCACCTCTGGCATTATCTGTGTCATTTTGCTTGTAGTGTTGGTGATTGCTTTTAGGAAAAAAAAGTTAGTGAGACTCTCCAGCCTTAGAAGGAGAGTACTAGTGACTTTCGCAGACGCACCTTCTGAACTAAATTATGAGAATGTGGTTAGAGCTTCAGGAAATTTCAGCATCCGGAATCTAATAGGAACAGGTGGTTTTGGGTCAACATACAAAGCTGAACTAACACCAGGTTTCCTTATTGCTGTTAAGAGACTGTCCATCGGCCGGATTCAAGGCATTCAGCAGTTTGAAGCAGAGATAAGAACATTGGGTAGAATTCGACATAAGAACCTCGTAACACTCATCGGTTATTACATGGGTGAGACAGAAATGTTCTTAATCTACAATTATCTTTCTGGAGGGAACCTTGAAACTTTCATTCATGAGAGAAAGTCACTCGATCCCTCATTTTGTGAATATGGAAATGGATTTAATATCGTTCCGTGGGCTAAGTTAATGGTCCAGGAGGGCCATTGTTCCGAGTTATTCTTGCCTTCTTTGTGGAAAGAGGTGCCTAAAGATAATTTATTGGGACTTTTAAGACTTGCACTGATCTGCACGGTGGAGACACTTTCGGTGCGCCCGTCAATGAAGCAGGTTGTTGAGAAACTGAGACAGTTGAAGTCTTGA 2847 0.4159 MSPLPRLLIVSAVFFTITHHSKALTPSMSSDALSLLNFKYLVSSDPRNLLSGWTNHSSNSHCHWFGVTCDNPLSGRVVSLKLSGLLAGKLSHFIGNLDNLRTLSLPHNMFSGEIPESIGKLQLLEVLELQGNNFSGKIPTQISYLISLGRLNLSNNALSGVVPSHLIGSRKLRIIDLSDNLLSGPIIVENSSKCEMLTHLKLSRNFLSQGIPSVIGKCRNLRTLLLDGNILEGRVPTEIGQISELRILDVSRNSLTERLPRELSNCQKLSVLVLTDLVDDLSVAEESQVDSPRGEFNAFVGDIPSEVLMLPSLQILWAPRANLGGRLPGGWKDSCSLRVLNLGNNYITGTVPESIGMCRNLSFLDLSSNNLVGFLPRHLQVPCMAYFNVSRNNISGVLRGFMSAKCGAENIPVGQDPKFLDREDFMVASTNIPIWGCQMKRLLRTDLENTVVSHDFSWNAFVGSLPSFFWAQDEDFASASNVSYNLFLNNNNFTGTLPYRLVSKCDSLRSVAVNLSVNQLSGWSSNASLLECSQLTQFKVAENRISGSIGPGFADLIMLQDLDLSGNKLYGSLPDQLKMMKRLKRLLLGGNNLTGEIPDQLDQLTSLLVLNLSHNSLTGSFPMSLTNASNLEILLLDHNKLQGNLPSSLSSLSALTKLDFSFNNLSGHIPSFQHPIDCNSFKGNRYLFPCPDTHPLSPAYLREPLKVKKQHREKKLKILVIVTIASTSGIICVILLVVLVIAFRKKKLVRLSSLRRRVLVTFADAPSELNYENVVRASGNFSIRNLIGTGGFGSTYKAELTPGFLIAVKRLSIGRIQGIQQFEAEIRTLGRIRHKNLVTLIGYYMGETEMFLIYNYLSGGNLETFIHERKSLDPSFCEYGNGFNIVPWAKLMVQEGHCSELFLPSLWKEVPKDNLLGLLRLALICTVETLSVRPSMKQVVEKLRQLKS* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01516 948 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 189 278 - -
Pte6g01516 948 Gene3D Transferase(Phosphotransferase) domain 1 863 948 - -
Pte6g01516 948 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515
Pte6g01516 948 PRINTS Leucine-rich repeat signature 361 374 - -
Pte6g01516 948 PRINTS Leucine-rich repeat signature 604 617 - -
Pte6g01516 948 Pfam Leucine rich repeat N-terminal domain 29 70 IPR013210 -
Pte6g01516 948 Pfam Protein tyrosine and serine/threonine kinase 783 870 IPR001245 GO:0004672|GO:0006468
Pte6g01516 948 Gene3D Ribonuclease Inhibitor 26 85 IPR032675 -
Pte6g01516 948 ProSiteProfiles Protein kinase domain profile. 781 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g01516 948 Gene3D Ribonuclease Inhibitor 278 410 IPR032675 -
Pte6g01516 948 SMART LRR_typ_2 242 266 IPR003591 -
Pte6g01516 948 SMART LRR_typ_2 580 603 IPR003591 -
Pte6g01516 948 SMART LRR_typ_2 97 121 IPR003591 -
Pte6g01516 948 SMART LRR_typ_2 556 579 IPR003591 -
Pte6g01516 948 SMART LRR_typ_2 652 674 IPR003591 -
Pte6g01516 948 SMART LRR_typ_2 145 168 IPR003591 -
Pte6g01516 948 SMART LRR_typ_2 604 627 IPR003591 -
Pte6g01516 948 FunFam Leucine-rich repeat receptor-like protein kinase 28 188 - -
Pte6g01516 948 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 486 869 - -
Pte6g01516 948 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 745 856 - -
Pte6g01516 948 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 453 696 - -
Pte6g01516 948 SUPERFAMILY Protein kinase-like (PK-like) 761 875 IPR011009 -
Pte6g01516 948 Gene3D Phosphorylase Kinase; domain 1 743 856 - -
Pte6g01516 948 Pfam Leucine Rich Repeat 360 380 IPR001611 GO:0005515
Pte6g01516 948 Pfam Leucine Rich Repeat 336 356 IPR001611 GO:0005515
Pte6g01516 948 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515
Pte6g01516 948 SUPERFAMILY RNI-like 89 396 - -
Pte6g01516 948 ProSitePatterns Protein kinases ATP-binding region signature. 787 809 IPR017441 GO:0005524
Pte6g01516 948 SUPERFAMILY L domain-like 299 680 - -
Pte6g01516 948 Gene3D Ribonuclease Inhibitor 86 277 IPR032675 -
Pte6g01516 948 Gene3D Ribonuclease Inhibitor 429 687 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01516 Pte-Chr6 32791443 32796123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01516 853 947 Receptor kinase-like Gene Family AT3G02130 48.421 5.91e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Pte6g01516 PK_Tyr_Ser-Thr 4.5e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01516 - - qsa:O6P43_006106 1055.05