Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01470 ATGGGCTTCTTGTACTTTGCCGGTGCCAACTTTGTTCTTACCTTGATCGCTGCTGTCCTTTGTGTGTGTTTTGCACCTACGGCAGCTGGCCCCGGTATACCAGAAATCAAGGCTTATCTAAATGGAGTCGATACCCCGAATATGTTTGGTGCTACAACTCTGATCGTGAAGATAATTGGAAGCATTGGAGCTGTGGCAGCAGGACTTGATCTAGGAAAAGAAGGGCCCCTGGTACACATAGGCAGCTGCATTGCGTCCCTATTAGGCCAAGGAGGACCAGATAATTACAGGATTAAATGGCGTTGGCTTCGTTACTTCAACAATGATCGTGATCGTCGAGATTTAATTACATGTGGTGCTTCTTCAGGTGTTTGTGCAGCATTCAGATCACCTGTAGGTGGGGTTTTATTCTCCCTCGAAGAAGTTGCTACCTGGTGGAGAAGTGCTCTTCTCTGGAGAACATTATTTAGCACAGCAGTAGTTGCAGTGGTGCTTAGGGCTTTCATTGAAATCTGCAGTTCTGGGAAATGTGGCCTTTTTGGGAGAGGAGGACTAATCATATTTGATGTGGGTGATGTCATTGTGAGGTATCGGGTGATGGACATCATCCCAGTTGTGGTCATTGGTATTATTGGTGGAGTTCTGGGAAGCCTCTACAATTATTGTCTACACAAGGTCCTCAGACTTTATAATCTCATCAACCAGAAGGGAAGAATCCATAAGCTACTTTTGAGTCTCACTGTTTCGCTATTCACATCAGTGTGCCTATATGGTCTCCCTTTCCTATCCAAATGTACCCCATGTGATTCCTCTCTTCCAGATTCAGTATGCCCAACTACCGAAGGACCTGGCAACTTCAAGCAATTCAATTGTCCAAATGGCTACTACAATGACCTTGCCACTCTGCTGCTGACTACTAATGATGACGCAGTTCGAAACATATTCTCAACTTACACCCCGAAGGAGTATCACCCGTCCTCCCTTCTCATTTTCTTTGCAATTTACTGCATACTGGGTCTGGTAACTTTTGGTATTGCTGTTCCTTCTGGATTATTCCTCCCAATCATCCTCATGGGGTCAGCCTACGGGCGTCTTCTTGGCCTTTTCATGGGACCTTATACAAATATTGACCAAGGTCTTTATTCTGTTCTTGGGGCTGCCTCCCTCATGGCAGGTTCAATGAGGATGACTGTTTCCGTTTGTGTGATATTCCTGGAATTGACTAACAACCTGCTTTTACTGCCCATAACCATGATTGTTCTCCTCATAGCCAAATCAGTGGGAGACTGTTTCAATCCAAGCATTTATGAAATTATACTGCACTTAAAAGGCCTTCCCTTCTTGGATGCACACCCAGAGCCATGGATGAGGAATCTCTCTGTTGGTGAACTCGTTGATGCCAAGCAAACAGTAATCACCCTGCATGGTGTGGAGAAGGTAGCACGTATAGTAGAGGTCCTGAGAAACACTACACACAATGGTTTTCCAATTGTCGATGAAGAGGTGGTACCACCAGTGGGAACACCAGTTGGTGCAAGAGAACTGCATGGAATAATCTTAAGATCCCATCTAATCCAAGCGTTGAGGAAGAAATGGTTCCTGAAAGAGAAAAGGAGAACAGACGAATTGGAAGTGAGAGAAAAGTTTACCTGGATGGACCTTGCCGAGAGAGAAGGAAAAATTGAAGAGGTAGTTGTGACAAGTGAGGAAATGGAAATGTATATTGATCTACATCCTCTTACCAATACAACTCCCTATACAGTATTAGAGACAATGTCCGTAGCAAAGGCTTTAGTCCTCTTCAGGCAAGTCGGACTCCGACATATGCTCGTCGTACCAAAATATCAAGCAGCCGGGGTGTGTCCAGTAATCGGTATTTTGACCAGGCAGGATCTTTTGGCATACAATATTCTGAATGCTTTCCCCCACCTCAAAAGGTCCAACGGCAGAGGAAAGAGAAGCTGA 1965 0.4499 MGFLYFAGANFVLTLIAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRSPVGGVLFSLEEVATWWRSALLWRTLFSTAVVAVVLRAFIEICSSGKCGLFGRGGLIIFDVGDVIVRYRVMDIIPVVVIGIIGGVLGSLYNYCLHKVLRLYNLINQKGRIHKLLLSLTVSLFTSVCLYGLPFLSKCTPCDSSLPDSVCPTTEGPGNFKQFNCPNGYYNDLATLLLTTNDDAVRNIFSTYTPKEYHPSSLLIFFAIYCILGLVTFGIAVPSGLFLPIILMGSAYGRLLGLFMGPYTNIDQGLYSVLGAASLMAGSMRMTVSVCVIFLELTNNLLLLPITMIVLLIAKSVGDCFNPSIYEIILHLKGLPFLDAHPEPWMRNLSVGELVDAKQTVITLHGVEKVARIVEVLRNTTHNGFPIVDEEVVPPVGTPVGARELHGIILRSHLIQALRKKWFLKEKRRTDELEVREKFTWMDLAEREGKIEEVVVTSEEMEMYIDLHPLTNTTPYTVLETMSVAKALVLFRQVGLRHMLVVPKYQAAGVCPVIGILTRQDLLAYNILNAFPHLKRSNGRGKRS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01470 654 Gene3D - 453 641 IPR046342 -
Pte6g01470 654 SMART cbs_1 470 529 IPR000644 -
Pte6g01470 654 SMART cbs_1 584 637 IPR000644 -
Pte6g01470 654 Gene3D Clc chloride channel 1 450 - -
Pte6g01470 654 PRINTS Chloride channel signature 379 395 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte6g01470 654 PRINTS Chloride channel signature 435 449 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte6g01470 654 PRINTS Chloride channel signature 121 140 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte6g01470 654 PRINTS Chloride channel signature 57 76 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte6g01470 654 PRINTS Chloride channel signature 397 416 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte6g01470 654 PRINTS Chloride channel signature 347 367 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte6g01470 654 PRINTS Chloride channel signature 26 43 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte6g01470 654 SUPERFAMILY CBS-domain pair 451 635 IPR046342 -
Pte6g01470 654 CDD CBS_pair_voltage-gated_CLC_euk_bac 471 635 - -
Pte6g01470 654 ProSiteProfiles CBS domain profile. 581 646 IPR000644 -
Pte6g01470 654 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 2 639 - -
Pte6g01470 654 Pfam CBS domain 583 635 IPR000644 -
Pte6g01470 654 Pfam Voltage gated chloride channel 14 428 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte6g01470 654 PRINTS Plant CLC chloride channel signature 174 181 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte6g01470 654 PRINTS Plant CLC chloride channel signature 156 166 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte6g01470 654 PRINTS Plant CLC chloride channel signature 299 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte6g01470 654 PRINTS Plant CLC chloride channel signature 142 150 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte6g01470 654 SUPERFAMILY Clc chloride channel 3 451 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01470 Pte-Chr6 32470261 32473553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01470 2 649 Ion Channels AT3G27170 79.167 0.0 1054
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01470 K05016 - gmx:100788620 1083.17