Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01461 ATGTTCTACTCTCAGCGTCTTCTTTCAAGTAAAGGGCCTTTAGGCGCCATATGGGTTGCCGCGTATTTTTTCAAAAAGCTCAAGAAATCCCAAGTCAAGGAGACTGACATTTGTTCATCTGTTGATAGGATATTGCTAGATGGAGTTGATGTTGTCACGTGCAGAATACTTGCCTACTTTCTTCTTGGAATTGTCAGAATATACTCAAGAAAGGTCGAATATCTCTTCCACGACTGCAATGAGGTCCTCATTGAAATTAAGAAATTTATGGAAAATGCAAAGGAAGATGGTCTTATCGAAAACTTGTGGGCGCCTTCTTGCTCTATATCTCTACCAAAAAGATTTGAACTCGATGCTTTTGATCTGGAGATCTATGAAGATGTTTATGTGGACAATATTGTTTGCAATGAAGAAATCACCCTCAAAGATACTTCTGGGAAAGATGAGGGCATGAGTCTGATTCGTCTTGACACCTATAATACCGAGGGGTCTGATGCCTGTCAAAACACATGCCCTAGTGATCCTGACATGGTGTGGGATATCCCAAAATATCAAATGGATGCCAATTTTCATGCTGATGCCAGCGGACCATCTGCTTCGACTGGCTTACATAAGCACGGAGACAAACAAGAAGATAGAATGCGTTCTGCGGATGTTAAAACCTGTTGTGGGGTTGAAAATGCTGCAGCTACCATGTTAAGTGAGGATCACCAAACCACACAGCATAGTATGAAGAGTCTAGAAAGAGTGCCATATGAGGGTGCTTTAACCAGAGAAGCAAGTATGGAGAAACTCCTGTACTCTAAAATTTTGCAAGAGCCAGCAGATATCCTGATTTTTTGTGATAAGAGTGGGGGGCCAATGCATGAAGGTGATGGGCAGCAAGCAACAAGAAATGAGATGCTTCAGGAGAAGGTGATTGATGACATTTTTGAAGATCATCTTATGGAAGTTGACTTGTTTTCAGGCATTAATGAAGTTGCTAAAAATGATGTGGGTGGATCCACGAATAAAAGTCATGGCTCAGAGGATGAGAAGCCTGAAAATGTGATAAGAAATGAAGGAAAAAATCAAATAAATATACCAGAATCAATGATGATTGAAAAGATTTTACAATCTGAGGTCCCACTCATTTCTGGTGGGGCTACTTCGCCAGAGTTCATGATGATTCCTACACCAGCTGTGATGGAACATGCTCGTTTTTCAAGGAAAAGAAAATGCTTAGTTGACGAGGCTCTAGTGTTGTCTAATGATGCAATTAGGAAAAGCATAAGTGACACAAGTGATTTAGTTTCTAAACGAAGAAAATGTCCTCCTACTCTGCTTGCTGCTTGGAGATTGACTCAGATTTCCACTCTCTCTCGAAGTTTCTTTGAACCTATCATTCCATGCCGGGCATTGGAGTTTACATTCCCGTCCTTCGAGGATGTGAATATTTCAGAAACAACTAAAGCTATCCCAACTGAGAATTTAGATGGGTCACAATCTGGGGACAGTGCTGGATCGGGGAATATAACAACTGCTCCAGTTACCCATGCACTGCATTCACCATATCGACCAGTTGAAGGCCTAGTGATTGTTAGGTCTGAGAATATAGCAACTGCTCCAACGACCCCTCCCCAGCAGTCAAAACTTCGACCAGTTGAAAGCACATCAACCCCTAAAGGAACTGAAAGACCTTCAAGTTCGACTGAAAGCCTAGAGTATAATCGATCTCTAACTATGAACAAAGAACTTAACTGCAATGAAGAGGAGCTCAATTTATGTGAAATGGAGGACAAAGAATTAAATGGATGGTCGGGGAAAACCAGGCTGCGTCAACATCTTCAGCTGCTCTTTCTTCTGATTCTTCCCACATCCATTCACCAGAGATTGAGCTCTCTCCGTCCCCAGCATTTACAGTGGACTGAAATGGCTGGAGGCATTATTCTGCAGTTATTGAGGAAGAAGCTTCACTCACAATCTAGACAGAACTCTTTGTTTTGGTCATCATTTATCTCAAAGAAAGATGAGGCAGCCTCTACGGGCTCAAGGTCTTTAAGAAAACTTGCACTCCTAGGAGCTGGGGTTTCAGGATTTCTAAGTTTTGCAACTGTTGCAGCTTCATCTGATGAAGCTGAGCATGGATTGGCGGCCCCAAATTACCCGTGGCCTCACGAGGGCATCCTCAGTTCTTATGATCATGCTTCGATCCGTCGTGGCCACCAGGTTTATCAGCAAGTATGCGCTTCTTGCCATTCTATGTCTCTGATATCATACCGTGATTTGGTTGGTGTTGCATATACAGAGGAGGAGACAAAGGCAATGGCAGCTGAAATTGAGGTGGTAGATGGTCCTAACGATGAGGGTGAGATGTTTACACGCCCTGGCAAACTCAGTGACCGCTTTCCTCAACCATATGCAAATGAACAAGCTGCTAGGTTTGCTAATGGAGGGGCATATCCTCCAGATTTGAGTCTCATCACCAAAGCTCGTCACAATGGTCAGAACTACGTTTTTGCTCTTCTTACTGGTTACCACGATCCTCCTGCTGGTATTTCTATCCGAGAGGGGCTGCATTATAACCCTTATTTCCCTGGAGGAGCAATTGCCATGCCTAAAATGCTCAATGATGGTGCTGTTGAGTACGAAGATGGTACCTCTGCTACTGAAGCTCAGATGGGGAAGGACGTTGTGACATTCTTGTCTTGGGCTGCAGAACCCGAGATGGAAGAGAGGAAACTTATGGGATTTAAATGGATCTTTGTACTGTCATTGGCACTTCTTCAAGCTGCATATTACCGTCGCTTGAAGTGGTCAGTGCTCAAGTCTCGGAAGCTGGTTCTTGATGTTGTCAACTAG 2841 0.4337 MFYSQRLLSSKGPLGAIWVAAYFFKKLKKSQVKETDICSSVDRILLDGVDVVTCRILAYFLLGIVRIYSRKVEYLFHDCNEVLIEIKKFMENAKEDGLIENLWAPSCSISLPKRFELDAFDLEIYEDVYVDNIVCNEEITLKDTSGKDEGMSLIRLDTYNTEGSDACQNTCPSDPDMVWDIPKYQMDANFHADASGPSASTGLHKHGDKQEDRMRSADVKTCCGVENAAATMLSEDHQTTQHSMKSLERVPYEGALTREASMEKLLYSKILQEPADILIFCDKSGGPMHEGDGQQATRNEMLQEKVIDDIFEDHLMEVDLFSGINEVAKNDVGGSTNKSHGSEDEKPENVIRNEGKNQINIPESMMIEKILQSEVPLISGGATSPEFMMIPTPAVMEHARFSRKRKCLVDEALVLSNDAIRKSISDTSDLVSKRRKCPPTLLAAWRLTQISTLSRSFFEPIIPCRALEFTFPSFEDVNISETTKAIPTENLDGSQSGDSAGSGNITTAPVTHALHSPYRPVEGLVIVRSENIATAPTTPPQQSKLRPVESTSTPKGTERPSSSTESLEYNRSLTMNKELNCNEEELNLCEMEDKELNGWSGKTRLRQHLQLLFLLILPTSIHQRLSSLRPQHLQWTEMAGGIILQLLRKKLHSQSRQNSLFWSSFISKKDEAASTGSRSLRKLALLGAGVSGFLSFATVAASSDEAEHGLAAPNYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYHDPPAGISIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTSATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01461 946 CDD Rad21_Rec8_M_AtSYN1-like 400 470 - -
Pte6g01461 946 PRINTS Cytochrome C1 signature 780 800 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 PRINTS Cytochrome C1 signature 862 881 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 PRINTS Cytochrome C1 signature 851 862 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 PRINTS Cytochrome C1 signature 735 754 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 PRINTS Cytochrome C1 signature 901 916 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 PRINTS Cytochrome C1 signature 715 734 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 PRINTS Cytochrome C1 signature 813 837 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 PRINTS Cytochrome C1 signature 882 901 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 PANTHER CYTOCHROME C1 668 944 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 MobiDBLite consensus disorder prediction 533 568 - -
Pte6g01461 946 ProSiteProfiles Cytochrome c family profile. 729 836 IPR009056 GO:0009055|GO:0020037
Pte6g01461 946 Pfam Cytochrome C1 family 717 933 IPR002326 GO:0009055|GO:0020037
Pte6g01461 946 SUPERFAMILY Cytochrome c 710 900 IPR036909 GO:0009055|GO:0020037
Pte6g01461 946 MobiDBLite consensus disorder prediction 330 357 - -
Pte6g01461 946 Pfam N terminus of Rad21 / Rec8 like protein 1 93 IPR006910 GO:0005515
Pte6g01461 946 MobiDBLite consensus disorder prediction 485 513 - -
Pte6g01461 946 FunFam Cytochrome c1, heme protein 706 901 - -
Pte6g01461 946 MobiDBLite consensus disorder prediction 338 352 - -
Pte6g01461 946 FunFam Cytochrome c1, heme protein, mitochondrial 902 946 - -
Pte6g01461 946 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 901 945 IPR021157 -
Pte6g01461 946 Gene3D - 706 901 IPR036909 GO:0009055|GO:0020037
Pte6g01461 946 MobiDBLite consensus disorder prediction 485 511 - -
Pte6g01461 946 Gene3D - 902 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01461 Pte-Chr6 32402031 32410930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01461 638 947 Chloroplast and Mitochondria Gene Families AT3G27240 84.839 7.00e-173 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01461 K00413 - qsu:111999908 553.518