LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte6g01430	ATGGCTGGAAAACCTATTAGAGGTATGATAATTCAGATGGCTCTTCTGGCAATTCTTATGAATGTTGCTGTTCAATCATCACGGCTCCTCTTAGGGACTAACAAACCCATACCATGTGATGCATCTCAGGTGGAGACTTGGTTCCAGGCCCAAATTCAAGATACCAAGAGGCCTGATCTTGACCCAGAACTAGTAAAGGCAGAGGCTACTCCTCCTAAGATCATCAAGGTCAATAAGGATGGAAGTGGGGATTTTAAGACTATGACAGGAGCAGTCAACAGCATTCCAGTTGGGAATGTCAATCGAGTTATAGTCTTCATTGGAGGAGTGTATACTGAGAAAATCAAGATTGAAAGGGAAAAACCTTTTGTCACATTTTATGGAGCGCCAAATGACATACCAACTTTGATGTTTGGCGGTACCGCAGCACAATAA	435	0.4276	MAGKPIRGMIIQMALLAILMNVAVQSSRLLLGTNKPIPCDASQVETWFQAQIQDTKRPDLDPELVKAEATPPKIIKVNKDGSGDFKTMTGAVNSIPVGNVNRVIVFIGGVYTEKIKIEREKPFVTFYGAPNDIPTLMFGGTAAQ*	145

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte6g01430	144	Pfam	Pectinesterase	76	130	IPR000070	GO:0030599\|GO:0042545
	Pte6g01430	144	Gene3D	-	23	142	IPR012334	-
	Pte6g01430	144	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	63	143	-	-
	Pte6g01430	144	SUPERFAMILY	Pectin lyase-like	70	138	IPR011050	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte6g01430	Pte-Chr6	32141049	32141483	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte6g01430	11	144	Carbohydrate Esterase	AT5G07420	41.606	1.53e-26	100

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte6g01430	K01051		-	csin:114319910	143.28

Showing 1 to 1 of 1 entries