Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01424 ATGGAGAAAGTTTTGGTCGAGAGTCTCACTAATGGAAACAGACAAACACAGGTTGAAGCGGCCAAGGTAGTCAGTAAATCGAGTAGCAAGCAGAGACACAAGTTGGCAAAAGGAGGTGTAATTACACCTTTGGTTTCCATGCTCTATATGAAGGACTACGACGCCATTGAAGCTGCTCTTTCTGCTCTGCTCAGCCTTACCTATGGCAGTGAACGGAACAAGACACAGATTGTGAACTCAGGGGCTTTACCAGCTTTGTTGATCCTTCTACAATGCCAAAGCCAGACACTGGTAGAAATCACAATAGCCGCCATGCTAACCCTTTCATCTTGCAAAGCAAATAAATTAGCCATTGCTTCATCTGGGGTTGTCGAAATCTTGGATAAATTTTTAAGTGGGCACCATGCAAATAAAACCAGTGTGCAAGGAAAGCTTGACGCCATAGCCACACTCCACAACCTCACAACATGCCAAGAAAGCATTCATTTTATTATATGCTCAGATGTACTATTTTCCTTACTGGAATTAGCACGTGATTCGGAAAAACCATCCGCATTGGTTGAGAAAACAATGGAACTACTTGAAGATACTGCCTGTTTGTCAGAGTTGGCACTTAATCATATTGCTAATGCTGCTGGTGCAATCCCGATACTGGTGGAGGTTATTGAAGAAGGATCCTTTCAATGCAAGGAGCATGCAGTTGGTATACTTCTCCTGATATGTCAGACTAGTAGAGAAAAATACAGAGGATTGCTCTTACGGGAAGGAATTATGCCGGGGCTGCTTCAGTTGAGTGTGGATGGCTCAAGGAGAGCGAAGAAAATGTCCAAAGAGTTACTATCGCTTCTGAGGGACTGCTCAAAGTATAGTTCAACAAGTAAACAAAAGAATTACGAGCAGGTACAGCAAATCATGGAGGAAATTGACTCAGTAGGAGAGCAATTATCAGGGATGACCATGAAAATGGTGGAGGATATGATTGCAAAGCTTAGTATATAG 999 0.4274 MEKVLVESLTNGNRQTQVEAAKVVSKSSSKQRHKLAKGGVITPLVSMLYMKDYDAIEAALSALLSLTYGSERNKTQIVNSGALPALLILLQCQSQTLVEITIAAMLTLSSCKANKLAIASSGVVEILDKFLSGHHANKTSVQGKLDAIATLHNLTTCQESIHFIICSDVLFSLLELARDSEKPSALVEKTMELLEDTACLSELALNHIANAAGAIPILVEVIEEGSFQCKEHAVGILLLICQTSREKYRGLLLREGIMPGLLQLSVDGSRRAKKMSKELLSLLRDCSKYSSTSKQKNYEQVQQIMEEIDSVGEQLSGMTMKMVEDMIAKLSI* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01424 332 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 81 IPR000225 GO:0005515
Pte6g01424 332 SMART arm_5 28 68 IPR000225 GO:0005515
Pte6g01424 332 SMART arm_5 70 110 IPR000225 GO:0005515
Pte6g01424 332 SMART arm_5 201 242 IPR000225 GO:0005515
Pte6g01424 332 SMART arm_5 111 156 IPR000225 GO:0005515
Pte6g01424 332 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Pte6g01424 332 Gene3D - 3 198 IPR011989 -
Pte6g01424 332 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 327 - -
Pte6g01424 332 SUPERFAMILY ARM repeat 4 284 IPR016024 -
Pte6g01424 332 Gene3D - 199 329 IPR011989 -
Pte6g01424 332 FunFam U-box domain-containing protein 4 3 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01424 Pte-Chr6 32090342 32092016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01424 5 285 U-box Gene Family AT3G54790 32.281 5.06e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01424 - - qsu:112021029 381.719