Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01411 ATGGGAAGAGCACCTTGCTGTGACAAAAGTGGACTCAAGAAAGGTCCATGGACACCAGAAGAAGATCAAATACTCATCAACTACATTCAAAATCATGGACCAGGCAATTGGTGTTCACTTCCAAAGAATGCCGGGTTGCAAAGATGTGGCAAGAGCTGTCGACTTCGATGGACGAATTACCTGAGGCCTGATATCAAGAGAGGGAGATTCTCGTTTGAAGAAGAAGAAACTATTATCCAACTGCACAGCGCCTTGGGGAACAAATGGTCGGCTATAGCAGCTCGTATGCCAGGGAGGACCGACAATGAAATAAAAAACTACTGGAACACCTACATTAGGAAAAGACTGCTGAAGACGGGAATTGATCCAGTTACTCATGCTCCACGCCTTGATCTTCTTGACTTGTCCTCAATCCTGAGCTTGGCTATGTGTTATCCATGGCTTTACAGCAAGTCAAACTTATTAGGTACGCAAGCCCTCATAAACCCAGAGTCGTTGAAGTTGGTGAGCACTCTCTTGTCATTGAAAAGTGAAAACCCTGAGTTATTGGCACACCATCTACAACAAAGTCAACTGGGAAATATGTCTCAGTTACAGAACCAAATCCCAGTATTACAAAACAACCATCAGTTTCAAACTCCAAATGATCAAGTCAATGTCGGCGTCCTCTCGTCCAATCTAACAGACTTCAGCTCCCAGAGCTCCTTATTACAAGAGAATTCATTGCCTTCATCTTTATCTGAGAACTTTTTTTCCCGACCAAACTTTTTTGATTTAGATGGTAACCCATGCTTTCAGGCACAAAACAATCATACCCTCCAAAAAATGAGCTATAACTCAGTACTTTGTACACCAGCATCAAGCTCAACGCCTCTGAACTCGCCATCAACTTGTATCAACAGCAGCACTGAGGACGAGAGGGATAGCTACTGCAGCGACCTCCTCAAGTTTGAAATTCCAGAGTTTTTCGATATAAGTGACTTCTTGTAA 990 0.4323 MGRAPCCDKSGLKKGPWTPEEDQILINYIQNHGPGNWCSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSALGNKWSAIAARMPGRTDNEIKNYWNTYIRKRLLKTGIDPVTHAPRLDLLDLSSILSLAMCYPWLYSKSNLLGTQALINPESLKLVSTLLSLKSENPELLAHHLQQSQLGNMSQLQNQIPVLQNNHQFQTPNDQVNVGVLSSNLTDFSSQSSLLQENSLPSSLSENFFSRPNFFDLDGNPCFQAQNNHTLQKMSYNSVLCTPASSSTPLNSPSTCINSSTEDERDSYCSDLLKFEIPEFFDISDFL* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01411 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte6g01411 329 Gene3D - 13 66 - -
Pte6g01411 329 CDD SANT 69 112 IPR001005 -
Pte6g01411 329 FunFam MYB-related transcription factor 13 66 - -
Pte6g01411 329 CDD SANT 16 61 IPR001005 -
Pte6g01411 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte6g01411 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 271 - -
Pte6g01411 329 Gene3D - 69 116 - -
Pte6g01411 329 SMART sant 13 63 IPR001005 -
Pte6g01411 329 SMART sant 66 114 IPR001005 -
Pte6g01411 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte6g01411 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte6g01411 329 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte6g01411 329 FunFam MYB transcription factor 69 116 - -
Pte6g01411 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte6g01411 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01411 Pte-Chr6 31994367 31995546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01411 1 329 MYB Transcription Factor Family AT4G21440 48.189 3.91e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g01411 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01411 K09422 - pvy:116107108 425.631