Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01408 ATGGCGAGAACCCCCTGCTGTGACAAGAGGGGACTCAATAAAGGTACATGGACACTCGAGGAAGATAGAAAATTGATTGTCTATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTTCCTAGGTTTGCAGGTCTTTCCAGGTGTGGGAAAAGCTGCAGGCTCAGATGGCTGAATTATTTGAGGCCCAACATCAAAAGAGGGAATTATACTAAACAAGAAGAAGAGACGATAATCAAATTGCACGAAAAGCTGGGCAATAGATGGTCTGCCATTGCAGCTCAACTACCTGGAAGAACTGATAACGAAGTGAAAAATCATTGGCATGCCTACTTGAAAAAAGGAGCTCTACAAAACCATTTCAACTCCGAGAAAGCAACTGCACTCAAGTCGAAGGATGAGTACTACTCGCACACATCTGATCAAAGTCAATCCAGCAGGCAAGCAGTAGAATCAGAACCTGAAATTGTGAATCTCTTGAATTCTGTTACACCTCCAATTCTGGAGACAAGCTCTTTCTCCACTCAAACATCCATGGGTGAAATTTCTCCCTCCTCTACAGACTCGTCGGTGGTAAGCTACGATCATTTTGCGGAGGATAACTTCGCGATGATCAATGGCTTGGATAAACTTTTGCCAGATCCTCTTGTGGACGACAGTATGTGGATAGAAGCTGTAATGGAAGAAAGTTGGTACACGCCCACTGAAATATACACGGATACTGAGTTTTCTTTTCCCACATGTGATGTAGAGATTTTGAGGCAGAATGTCATGTACGAGGAATACCAGGGTTTATTTGGTTGA 804 0.4378 MARTPCCDKRGLNKGTWTLEEDRKLIVYVTRYGCWNWRQLPRFAGLSRCGKSCRLRWLNYLRPNIKRGNYTKQEEETIIKLHEKLGNRWSAIAAQLPGRTDNEVKNHWHAYLKKGALQNHFNSEKATALKSKDEYYSHTSDQSQSSRQAVESEPEIVNLLNSVTPPILETSSFSTQTSMGEISPSSTDSSVVSYDHFAEDNFAMINGLDKLLPDPLVDDSMWIEAVMEESWYTPTEIYTDTEFSFPTCDVEILRQNVMYEEYQGLFG* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01408 267 MobiDBLite consensus disorder prediction 138 152 - -
Pte6g01408 267 CDD SANT 69 112 IPR001005 -
Pte6g01408 267 SMART sant 13 63 IPR001005 -
Pte6g01408 267 SMART sant 66 114 IPR001005 -
Pte6g01408 267 Gene3D - 69 148 - -
Pte6g01408 267 CDD SANT 16 61 IPR001005 -
Pte6g01408 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte6g01408 267 MobiDBLite consensus disorder prediction 133 152 - -
Pte6g01408 267 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte6g01408 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte6g01408 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte6g01408 267 FunFam MYB-related transcription factor 13 66 - -
Pte6g01408 267 Gene3D - 14 66 - -
Pte6g01408 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 189 - -
Pte6g01408 267 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte6g01408 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte6g01408 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01408 Pte-Chr6 31980420 31981581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01408 1 227 MYB Transcription Factor Family AT1G06180 43.612 2.43e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g01408 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01408 K09422 - qsa:O6P43_000644 257.684