Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01404 ATGTCCAATCAAACTCCAATCTGTGTACGTAAATCAGAGAAACTCCAAACTAGGAGAGATGGTTCCATCTCCCTGGTGGAGCGGCTTAAGAAGTGGAAACAATACAATGCTCAACTCGATATTTGTAATGAGGTTGGCAAACCAATTCGCAAGTTACCTGCAAAAGGGTCAAAGAAGGGATGCATGAAAGGAAAAGGAGGACCAGAGAATTCACGTTGTAATTACAGAGGCGTTAGGCAAAGGACGTGGGGCAAGTGGGTTGCTGAAATCCGAGAGCCAAACAGGGGGAGTAGGCTTTGGCTCGGTACCTTTCCTACTGCTATTGCAGCCGCACTTGCTTATGATGAAGCAGCTAGAGCCATGTACGGCTCTTGTGCCCGCCTCAACTTCCCCAACATTTCAGTCTCCACTTTCACTGAGGATGCTTCGAATGATTCTCCAACTGCAGGTGAATCTTCATCAAATCACTCTGAGTCTGATGTGTGTGCACATGAAGAGGAAATCGGTAAACCCAATTCCCCTGATGTGAAGCCTGGGGATTGGGATGGTGAATCAGGAATTGGTTCCGCCTCTCAGGTGTTATGA 585 0.4735 MSNQTPICVRKSEKLQTRRDGSISLVERLKKWKQYNAQLDICNEVGKPIRKLPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIAAALAYDEAARAMYGSCARLNFPNISVSTFTEDASNDSPTAGESSSNHSESDVCAHEEEIGKPNSPDVKPGDWDGESGIGSASQVL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01404 194 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Pte6g01404 194 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Pte6g01404 194 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Pte6g01404 194 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Pte6g01404 194 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Pte6g01404 194 SUPERFAMILY DNA-binding domain 74 131 IPR016177 GO:0003677
Pte6g01404 194 MobiDBLite consensus disorder prediction 158 173 - -
Pte6g01404 194 Gene3D AP2/ERF domain 74 133 IPR036955 GO:0003700|GO:0006355
Pte6g01404 194 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 161 - -
Pte6g01404 194 MobiDBLite consensus disorder prediction 140 194 - -
Pte6g01404 194 CDD AP2 73 132 IPR001471 GO:0003700|GO:0006355
Pte6g01404 194 MobiDBLite consensus disorder prediction 140 157 - -
Pte6g01404 194 FunFam Ethylene-responsive transcription factor 2 73 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01404 Pte-Chr6 31939219 31941227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01404 21 194 AP2-EREBP Transcription Factor Family AT2G40340 49.438 1.36e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte6g01404 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01404 - - jre:108991963 232.646