Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01400 ATGAGAAGTGAGCTCAGGGGAGGCACAGCTTCCATTTCAGTACCAAACCCTAGTCTCTTCAACACCATTTACAACCCTCTGCCAGGCGCTCTCAGTGGCTGTCTTGGAAGCCTCGATGGGGCATGTCTCGAAAAGCTCTTAGTCCACTGTGCTTGTGCTTTAGAAACCAACGATGTCACTTTGGCTCAACAAGTTATGTGGGTGCTCAACAACGTTGCTTCCTCAGTTGGCGATACTAACCAAAGGCTCACCTCATGGTTTTTGAGGGCACTTATCTTTAGGGCTTCAAGGGTTTGTCCCACGGGGCCTACGAATTTCAACAGTAGCAACGGTATCCAAAGGAGGTTGATGTCTGTGACTGAGTTAGCAGGGTACGTTGATTTAATCCCTTGGCATAGATTTGGTTTCTGTGCATCAAATAACGCCATTTTTAAAGCGGTTCGAGGTTTCACTAAAGTTCATATATTAGACTTCAGCATCACTCACTGTATGCAGTGGCCTACTCTAATTGATGCGTTGGCTAAAAGAGACGAAGGGCCTCCTTCACTCAGAATAACTGTACCCTCTTGTAGGCCACCGGTCCCTCCTTTGGTTAATGTATCTACTGAAGAAGTCGGTTTTCGTTTGAGTAATTTTGCCAAGTTGAAGGAAGTTCCTTTAGAATTCAATGTGGTAGGCAGTTCTTCTTTTCAACTAGGAGAAGAGTTTTACTTTGAAACTCTATTAACTCACTTGAATCCTTCAGCTTTAAACCTTAGGGATGATGAAGCTTTAGTGATAAACTGCCAAAATTGGCTGCGTTATCTGTCGGACGAAGATTGTGCTCAAGCCACTTCAATTCGAGAAACTTTCCTGAGTATAATCAAAGATCTTAACCCTCAAATAGTGCTGATAGTAGATGAAGATTGCGACCTTAGTACATTAAGTTTAACATCGAGGATCACCGCTTGTATCAATTACCTATGGATCCCTTTTGATGCCTTGGAGACTTTCTTGCCTAAAGATAGTTTCCAGAGATTAGAATATGAATCTGACATAGGGCAGAAAATAGAAAACATAATAGGGTTTGAAGGGTTGCAAAGAATAGAGAGATTGGAGTCAGCAACGAAACTGTCAGAGAGGATGAAAAATGCTGGGTTCTTTAGAGTTCCATTTTGCGACGAGACTGTTAACGAAGTGAAGACCTTGCTTGATGAGCATGCAAGTGGGTGGGGGATGAAGATCAAAGAAGATGCATTAGTCCTCACATGGAAAGGCCACAATTCAGTGTTTGCAACAGCTTGGGTCCACAGTAGTATGGAGGATTGA 1308 0.4304 MRSELRGGTASISVPNPSLFNTIYNPLPGALSGCLGSLDGACLEKLLVHCACALETNDVTLAQQVMWVLNNVASSVGDTNQRLTSWFLRALIFRASRVCPTGPTNFNSSNGIQRRLMSVTELAGYVDLIPWHRFGFCASNNAIFKAVRGFTKVHILDFSITHCMQWPTLIDALAKRDEGPPSLRITVPSCRPPVPPLVNVSTEEVGFRLSNFAKLKEVPLEFNVVGSSSFQLGEEFYFETLLTHLNPSALNLRDDEALVINCQNWLRYLSDEDCAQATSIRETFLSIIKDLNPQIVLIVDEDCDLSTLSLTSRITACINYLWIPFDALETFLPKDSFQRLEYESDIGQKIENIIGFEGLQRIERLESATKLSERMKNAGFFRVPFCDETVNEVKTLLDEHASGWGMKIKEDALVLTWKGHNSVFATAWVHSSMED* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01400 435 Pfam GRAS domain family 43 428 IPR005202 -
Pte6g01400 435 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 418 IPR005202 -
Pte6g01400 435 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Pte6g01400 435 ProSiteProfiles GRAS family profile. 34 429 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01400 Pte-Chr6 31894161 31895468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01400 16 429 GRAS Transcription Factor Family AT3G49950 46.099 1.78e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte6g01400 GRAS 2.1e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01400 - - qsa:O6P43_000622 674.47