Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01363 ATGGAGGTTCCGGCAATGGAGGAAATCAAGTCCGATGTTCATTTGACTTCAGCTGCTGCTTTTGTCGAGGGTGGTATTCAGGAAGCTTGTGATGATTCCTGTAGCATATGCCTGGAAGCCTTTTGTGATAGTGATCCTTCCACGGTGACAAGCTGTAAGCATGAATTTCATCTTCAGTGTATCCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAATCAATTAGCCTGAAAGATCCAACCAGTCAGGAGCTACTGGAGGCAGTCGAAAAGGAGAGGAGCTTGAGGCTAAATCCATCTAGGAATGCCACTATATTTCACCATCCTGCTTTAGGAGAATTCGAGTTACAGCATTTGCCTGTTGGTGTAAGTGATGCTGAGCTTGAGGAAAGGATAATCCAGCACTTAGCTGCTGCAGCTGCAATGGGGCGCGCTCGACACATTGCTAGAAGGGAAGGCCATAGAAACAGATCATCAGCTCAAAGTCGCCCACAATTTTTGGTGTTCTCCCCTCATCCTAATTCACCTCCTGCAGTTCCAGTTTCTTCTTTGCCAGCTCAGAATGAGGATGTTGAGTTAACTGCTGCAGTTAATGAAGCCACTCTATCCCCTCTTCCTACTTCTGTTGGAGAAGAATCTCCACTTGCATCTGCTGCTCCTCCTGCCCCAGCTAACCAGGTTTCTGCTTCAGGATCTGGATCAGTCGTTCTTTCTGCCAATCAACAAGGGACTTTGTTAAGAACTGGGAGTTCTCCTAGTCCCTCATCTCCAGTCAGTCAGGACAGAGCCGGACCATCTGAATTCCCATCATTTTCTGAATCTCTCAAGTCTCGGTTAAATGCAATGTCAACGAAATACAAAGAGTCTATATCTAAAAACACAAGGGGGTGGAAAGAAAGATGGTTTTCTCGTAACACATCCATGTCAGAACTTGGTTCTGAAGTGAGAAGAGAGGTGAATGCTGGAATTGCTACTGTATCACGCATGATGGAGCGTCTGGAAACTCGAGACAACAGGAGAACCAATGAAACTTCTCTGTCTACTGGTATCGAGGATAGATCTGCCACAGGATCGTATAATCAGCATATACCCGAGACTGCTGATGGAAGTCCTCTGGGGGAAGGTAATGTGCCAGCATCTTGTGCAACAGGGTCTAGATCAAGTTAA 1176 0.466 MEVPAMEEIKSDVHLTSAAAFVEGGIQEACDDSCSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVEKERSLRLNPSRNATIFHHPALGEFELQHLPVGVSDAELEERIIQHLAAAAAMGRARHIARREGHRNRSSAQSRPQFLVFSPHPNSPPAVPVSSLPAQNEDVELTAAVNEATLSPLPTSVGEESPLASAAPPAPANQVSASGSGSVVLSANQQGTLLRTGSSPSPSSPVSQDRAGPSEFPSFSESLKSRLNAMSTKYKESISKNTRGWKERWFSRNTSMSELGSEVRREVNAGIATVSRMMERLETRDNRRTNETSLSTGIEDRSATGSYNQHIPETADGSPLGEGNVPASCATGSRSS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01363 391 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 23 83 - -
Pte6g01363 391 MobiDBLite consensus disorder prediction 207 236 - -
Pte6g01363 391 SMART ring_2 34 74 IPR001841 -
Pte6g01363 391 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Pte6g01363 391 Pfam Ring finger domain 32 74 IPR001841 -
Pte6g01363 391 MobiDBLite consensus disorder prediction 152 186 - -
Pte6g01363 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 83 IPR013083 -
Pte6g01363 391 SUPERFAMILY RING/U-box 26 82 - -
Pte6g01363 391 MobiDBLite consensus disorder prediction 345 368 - -
Pte6g01363 391 MobiDBLite consensus disorder prediction 248 276 - -
Pte6g01363 391 FunFam E3 ubiquitin-protein ligase RHF2A 5 108 - -
Pte6g01363 391 MobiDBLite consensus disorder prediction 338 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01363 Pte-Chr6 31636477 31641139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01363 31 82 C3H Transcription Factor Family AT4G00335 44.231 4.66e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01363 K19043 - gmx:100814908 518.464