Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01360 ATGGATGAGGTTAAGCCCCTGAAGGCCTTCAAGCCATGTCTTTCCTCAGCTGAACTGAGAGAGAGTAGTACTGCTTTCCCAGTTCCTTATAGATCCGATGAGGTTGACGGTGTTCAAAGCCTTTATGTTTTCTGTTCCAGTCTAGTCGTTTTCTTATCTCTCTCCACTTTGATCACTACCCGTCCCTCTGTAAGCGTCCCATGCAGCAACCTATTCAACATAGTGACTGTGAGATGCGGGCATTGTGCCAATTTGTTGTCAGTTAACATGGGGCAAACCCTTCAGACCTACCCTCAAGATCCTCAGAAACAACCCCAGGTCTCTGAAGATTCTGGCAATAAGGAGTTTGGATCATCTTCAAAATGCAATAAATTCAGTCCATTTGGGACTGAAGAACATGAAGAAACCAGAATGCCTCCAATTCGTCCCCCTGAGAAGAGACACCGGGTCCCTTCTGCATATAATCGTTTCATAAAGGAGGAAATTCAAAGAATTAAGGCCAGTAATCCAGATATCAGCCATAGAGAGGCCTTCAGCACAGCAGCCAAAAATTGGGCACATTTCCCTCACATTCACTTTGGACTAAAACTGGATGGAAACAAGCAAGCAAAGTTGGACCAGACTATTTCGGGCGAAGGGACTCAAAAATCTAATGGTTTCTACTGA 666 0.4474 MDEVKPLKAFKPCLSSAELRESSTAFPVPYRSDEVDGVQSLYVFCSSLVVFLSLSTLITTRPSVSVPCSNLFNIVTVRCGHCANLLSVNMGQTLQTYPQDPQKQPQVSEDSGNKEFGSSSKCNKFSPFGTEEHEETRMPPIRPPEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQTISGEGTQKSNGFY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01360 221 PANTHER PROTEIN YABBY 6-RELATED 63 204 IPR006780 GO:0007275
Pte6g01360 221 MobiDBLite consensus disorder prediction 127 149 - -
Pte6g01360 221 SUPERFAMILY HMG-box 140 188 IPR036910 -
Pte6g01360 221 CDD HMG-box_SF 149 185 - -
Pte6g01360 221 Gene3D High mobility group box domain 131 191 IPR036910 -
Pte6g01360 221 MobiDBLite consensus disorder prediction 96 149 - -
Pte6g01360 221 FunFam axial regulator YABBY 5-like 133 191 - -
Pte6g01360 221 MobiDBLite consensus disorder prediction 96 126 - -
Pte6g01360 221 Pfam YABBY protein 63 195 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01360 Pte-Chr6 31614491 31622130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01360 44 222 C2C2-YABBY Transcription Factor Family AT1G08465 59.358 1.66e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pte6g01360 YABBY 3.3e-58 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01360 K25796 - qsa:O6P43_000542 265.003