LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte6g01346	ATGGACTCTCGGATGGATCAGTATGAGATAATGGAGCAAATTGGTCGCGGAGCTTTTGGAGCTGCCATTCTCGTCCTTCACAAGGCTGAGAGGAAAAAGTATGTATTGAAGAAAATCAGGCTTGCCAGGCAGACTGAGCGGTGTAGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGAATCCAACATCCTTACATTGTAGAATTTAAGGAAGCTTGGGTCGAGAAGGGCTGCTATGTCTGCATTGTCACTGGATACTGCGAAGGTGGAGATATGACTGAGTTGATGAAAAAGTCAAATGGTGTTCACTTCCAAGAGGAGAAACTTTGTAAGTGGTTCACACAGCTCCTGTTGGCAGTCGAGTATTTGCATTCAAATTTTGTTTTGCACCGTGACCTGAAGTGTTCCAATATCTTCCTTACCAAGGATCAAGATATTCGCCTGGGAGACTTTGGGCTCGCAAAGACACTGAAAGAGGATGATTTGGCTTCTTCTGTTGTAGGAACACCTAACTATATGTGTCCTGAACTGCTCACAGATATTCCTTACGGATTCAAATCTGATATCTGGTCTCTTGGGTGCTGCATATATGAGATGGCTGCTCGTCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGACTCATAAGCAAGATAAACCGCTCGTCCATTGGTCCTTTACCTCCCTGCTACTCTCCATCATTGAAAACACTCATAAAGGGAATGCTGAGAAAAAGTCCTGAGCATCGGCCGACGGCGTCTGAAATCTTAAAGCATCCTTATCTACAACCTTATGTTGAACAATATCGTTCATCTTTCAACCCTCTACCAACTGTTTCCCCTGAAAAGTCTATATCTGCTGCTCGTGATTCTGGAAGAAATATGGTAGAAAGCCAAAATAGTAACAGCACATGTAGCTATAAAGATAGCTTGCTTTCAAGTGAGAAGAACATTTCAGCAGTAGGTTTAAACAGTGTTAATAAGGCAATTGATACGGATACAGCATTTCAAGAAGATGATGAAGTTTCCGATCATCGGCTGCCAGGTGAAGAAGAAATCATCTTGAATGCCTGTACAGCCAAAAAGAACCACCATGAGTTAATAAAGCCACATCAAAATGAAGAGAGACCTAAAACTGAGTCTAGGCAACCGAAAACAATTGGTAACATAATGTCGGCACTGAAAGGGGGTAAAGTTAGGGATAGTTCTCCTGTGAGAAGCAATCGTTCAAAGGCTGGCAGTTCATCAATGCAAAGAACCAACACCGAGACACAGGTTAAATGGCCAAAATCTACTGCTGTTGCACCTAGTGGCAAGCCTAGTACAGAGTCAAAAATGGTTACCACAAAGAAGGCGATCCCAGAATCTGTCAAACGAGTTCATGGATCTCATTCCCTCAAGCACGAGTTACCGTTGATAGAATCTACCCCAAAAACTAAAGCCCGACGTGAAGAGACTCCTCCAATTGGTCCTACAAAGGTTGCTGAAGATGGCATTAATGCTAAAACAACTCCAAGGCTTGTTAGACGACCTTCATTTCCAGCTAGGATGAAGCAGGAGCCGCCTGATATGTCAAATGTAATGAGTGATTTTATGAAGAGTGCTACCAACGAATTGCTCCAGGAGAACCAGAATAAGACTGCTAAAGAATTGCCTATTGTTCTAGTGACTCATGGTTCTGAAGTGGTCCCTCCTACTCCCCGTAACTTTTTCCAGAGAGTTCCTAAAGAGATGCAGACAGAAAGCAGTAACTCTGTCTCATCATCTGTATCTATTCACGTGTTTGAGCTCTGTGACGATGCCACAACTCCTTTTGAGGACTTGACAGAACGTGTGCTTTCCAATCAAGCAAGTGCTTCCCACATTGAAAAGTTTGAATCTTGCCGCCAAATTAGCTCTCGTAGAGTGCTTCCTCATTCTGGACCTGCTGTAGATGTATCTGGAGAATCCTCTCTGCTCATCATGGATCGTCAAAATGTGTGTAATAATAATGAAAAAGTGACCTTCAGTTCAACTTTGGATCTCCAAGTGGCCAGTTTGACGGAGATATTACTCTGTAAAGATGATACGCCCAGAGACTGGACTAGTTATTCTTCCACCACCCTTGGAAGTTATCATAAATCTAGTAGATCTTCAAGTGAAACCTCTACAACCGTGGAAGATCGTCAGAATACTGCTTCCTTTGATGATAACAATTTGGCTTTTCCTAGATCTGTTAAAGTTCCGGTTCCGTGTTCTGGAGAAAATTTGGCTCATGAGCGAAGTTCACCATTCATGAAACCTAATAACAAGCCTGAAGTAGTGATCAAGCCAAGCATTACATGTGCCTCTAGTAATGACAAATTTACTGTCATGGAGCTCTTTTCGTCAGTGGCTGAAAGTTCTACTTCCATTAACTCGTCTAATGTACCAACCCCAAAAGGTTTGCTTGCAGAAGAAGGTAATATTTCACAAATTTCGACTTGTGAAAAGCCGGTGGCTGCACAATTTCCTCCAGTCCTTGATGATATCATCCATGTTATAAGGCACAGTAGTTTCCGTGTTGGGAATGAGCAACCTGTAATGGAGTCTGTTGAGATGGGAGCTCAAAATATGGACGGTGGAAATCCAATAAATGTCGCTAGTAATGAACTAGAGATGGGAACTATTATCTCTCCCGACTACCACAGAACCTCAAGTTGCTCAGGAAGTCTGAGTATGAAATCAAATATTTCTGATGACCTTAGTGTAAGAAACCACGCTTATTCCACTTCAAATGCTGATTGCCCTCAGCTGAGAAAATCTGTCTCTTCTACAACGGAAGAAGTAATTCAAACACCTGAGAAAGAAACCTTAGATGTGAAATCATTTAGGCAGAGGTCTGAGGCCTTGGAAGGGCTTCTAGAATTATCTGCAGAGTTGTTAGAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTAAAACCTTTTGGAAAAGATAAGGTCTCCCCAAGAGAAACAGCAATCTGGTTAGCCAGGAGTCTCAAAGGAATGATGATAGAAGACAGTGGACGCAGTAATTCATGA	3045	0.4253	MDSRMDQYEIMEQIGRGAFGAAILVLHKAERKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMTELMKKSNGVHFQEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDIRLGDFGLAKTLKEDDLASSVVGTPNYMCPELLTDIPYGFKSDIWSLGCCIYEMAARRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKSPEHRPTASEILKHPYLQPYVEQYRSSFNPLPTVSPEKSISAARDSGRNMVESQNSNSTCSYKDSLLSSEKNISAVGLNSVNKAIDTDTAFQEDDEVSDHRLPGEEEIILNACTAKKNHHELIKPHQNEERPKTESRQPKTIGNIMSALKGGKVRDSSPVRSNRSKAGSSSMQRTNTETQVKWPKSTAVAPSGKPSTESKMVTTKKAIPESVKRVHGSHSLKHELPLIESTPKTKARREETPPIGPTKVAEDGINAKTTPRLVRRPSFPARMKQEPPDMSNVMSDFMKSATNELLQENQNKTAKELPIVLVTHGSEVVPPTPRNFFQRVPKEMQTESSNSVSSSVSIHVFELCDDATTPFEDLTERVLSNQASASHIEKFESCRQISSRRVLPHSGPAVDVSGESSLLIMDRQNVCNNNEKVTFSSTLDLQVASLTEILLCKDDTPRDWTSYSSTTLGSYHKSSRSSSETSTTVEDRQNTASFDDNNLAFPRSVKVPVPCSGENLAHERSSPFMKPNNKPEVVIKPSITCASSNDKFTVMELFSSVAESSTSINSSNVPTPKGLLAEEGNISQISTCEKPVAAQFPPVLDDIIHVIRHSSFRVGNEQPVMESVEMGAQNMDGGNPINVASNELEMGTIISPDYHRTSSCSGSLSMKSNISDDLSVRNHAYSTSNADCPQLRKSVSSTTEEVIQTPEKETLDVKSFRQRSEALEGLLELSAELLEQNRLEELAVVLKPFGKDKVSPRETAIWLARSLKGMMIEDSGRSNS*	1015

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte6g01346	1014	MobiDBLite	consensus disorder prediction	406	449	-	-
	Pte6g01346	1014	ProSitePatterns	Protein kinases ATP-binding region signature.	14	37	IPR017441	GO:0005524
	Pte6g01346	1014	SMART	serkin_6	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte6g01346	1014	MobiDBLite	consensus disorder prediction	697	731	-	-
	Pte6g01346	1014	Gene3D	Transferase(Phosphotransferase) domain 1	90	330	-	-
	Pte6g01346	1014	SUPERFAMILY	Protein kinase-like (PK-like)	4	312	IPR011009	-
	Pte6g01346	1014	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Pte6g01346	1014	CDD	STKc_Nek	7	262	-	-
	Pte6g01346	1014	Pfam	Protein kinase domain	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte6g01346	1014	Gene3D	Phosphorylase Kinase; domain 1	1	87	-	-
	Pte6g01346	1014	MobiDBLite	consensus disorder prediction	367	450	-	-
	Pte6g01346	1014	FunFam	Serine/threonine-protein kinase Nek2	5	87	-	-
	Pte6g01346	1014	MobiDBLite	consensus disorder prediction	280	303	-	-
	Pte6g01346	1014	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	5	962	-	-
	Pte6g01346	1014	FunFam	Serine/threonine-protein kinase Nek5	90	335	-	-
	Pte6g01346	1014	ProSiteProfiles	Protein kinase domain profile.	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte6g01346	1014	MobiDBLite	consensus disorder prediction	477	496	-	-
	Pte6g01346	1014	MobiDBLite	consensus disorder prediction	367	382	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte6g01346	Pte-Chr6	31487368	31493662	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte6g01346	14	263	MAP Kinase Kinase Kinase	AT1G53570	31.373	7.53e-36	141

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Pte6g01346		Pkinase	2.8e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte6g01346	K08857		-	pvy:116138889	1032.32