Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01325 ATGTACCACCATCAACAATACCAAGTAAATCACATCCGCTCTTCCTCGAGACTAGATATCCCTTCAGACAGGTACATGTTCATTCAAGGTGGCAACGGTCAAGATTCCGGAGTCGTTCTCTCAACTGATGCCAAGCCTAGACTCAAATGGACACCAGATCTTCATGCCAGATTTATAGAAGCGGTTAATCAATTAGGTGGAGCAGACAAGGCAACACCAAAAACATTAATGAAATTCATGAGCATTCCAGGGCTTACCCTTTATCACTTGAAGAGCCACCTGCAGAAGTACAGACTGAGCAAGCATGTACATGGACAAAATCATAACCTGGACAACAAGATTGGTGTCTTAGGAGGAGAAAGGATTTCTGAAGTTAACGAAACTCATATGAACAATTCAAGTTTTGGACCTCAAACGCCCAAAGATTTACCTATCAGTAAGACACTGAAGATGCAGATTGAAGTGCAGAGAAGTTTGCATGAACAGATTGAGGTTCAAAGACACTTACAGTTCCGTATAGAAGCTCAAGGAAAATACCTGCAGTCAATGTTGGAGAAAGCACAAGAGACACTTGGAAGACAGGATTCAGACACATTAGGACTTCACGCTGCAAAAGTACAAGTACAACTATCTCAAGTGTCATCTCAATGCCTGAATTCTACAATAATGGACATGAAAGAATTACAAACATTTTGTCCCCGACATGTACAAGCTAATCAGCCAATACATTATTCAATTGATAGATGCATCACTTGCTGCGAAGCATCCCAAAAGGACCACGATATACAAAGTGGTGTCATGAGCTTGATACCATTGTATAATACTAATGCCTTCATTGAACGGAAGGAGACTATGGAAGATCATATGCAACAGAATGCTAAACGCTATTGGTGTAATGATCCGAAAGGGAACAAGTTTCCTTCCAGATTAGGAGAAGATGCAGAGATAAACTTTCAGGTCGAAAGAAGCTCCAGTAATTTGACAATGAGTATTGGAATTGAAGGAGAAACTAAGAACTTCAGCCACCAAAATCCAGAGAGATTAAACAAGGGAAGGGAAACTGAAAACAATTTCCTAGACAGAAGCAACAAGGGGACAGAACCGTTCAACGTAGAAGACAAGAAGATTGCAATGGAGTACAAGTTTCCTTACTTTTTGGGTAGCCTGGACCTTAATGTCCGTGATGAAAACGATGCTGCAGCAAATCTCAAACAACTTGACTTAAATGGTTTCAGTTTAAGTTGA 1245 0.4048 MYHHQQYQVNHIRSSSRLDIPSDRYMFIQGGNGQDSGVVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTLMKFMSIPGLTLYHLKSHLQKYRLSKHVHGQNHNLDNKIGVLGGERISEVNETHMNNSSFGPQTPKDLPISKTLKMQIEVQRSLHEQIEVQRHLQFRIEAQGKYLQSMLEKAQETLGRQDSDTLGLHAAKVQVQLSQVSSQCLNSTIMDMKELQTFCPRHVQANQPIHYSIDRCITCCEASQKDHDIQSGVMSLIPLYNTNAFIERKETMEDHMQQNAKRYWCNDPKGNKFPSRLGEDAEINFQVERSSSNLTMSIGIEGETKNFSHQNPERLNKGRETENNFLDRSNKGTEPFNVEDKKIAMEYKFPYFLGSLDLNVRDENDAAANLKQLDLNGFSLS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01325 414 Pfam MYB-CC type transfactor, LHEQLE motif 144 190 IPR025756 -
Pte6g01325 414 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Pte6g01325 414 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 23 279 IPR044848 GO:0003700
Pte6g01325 414 Gene3D - 44 103 - -
Pte6g01325 414 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Pte6g01325 414 FunFam Myb family transcription factor 44 102 - -
Pte6g01325 414 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Pte6g01325 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01325 Pte-Chr6 31342848 31345394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01325 77 415 G2-like Transcription Factor Family AT3G04030 42.609 1.93e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte6g01325 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01325 - - pvy:116123155 477.248