Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01318 ATGGGGTTGAGGGACTATTGCAATGTAGAAGACAAGAATATGAGCTTTCACACACCAACTTTCATTGAATGGCTCAGGCCATCAGCTTTTCCTAATTCTTCATCAGTCACTTCATCATCACCATCTTCTCCTTTACTTTCTTGTACTGCACAGCAACAAGAATTTGCTACACAGACTATTCAGTTTTTGCCGGTTATAAGTGACTTAAGGGATTTGAATCCTTTGAAGGAAGAAATCGTTGTCAGGCAAAACGAATTACCTGGAAAGCCTGCAGAGCAAGTTACTGTAGCCCTACACATTGGCTTACCTAACACAGATGATTGGGATATCACAAGGAAAGTGCTTGATGTCAAAGAAGAGCCAGTTAAAAGAAGCACTAATGGTCGCTCTTTCAACACAGAGCGAAGATTTTGGATCCCAACTCCTGCGCAGATTCTAGTTGGACCTATGCAATTTGCTTGCTCCATATGTAGCAAGACTTTCAATAGGTATAATAACATGCAGATGCACATGTGGGGCCATGGTTCTGAATTTAGGAAGGGGCCGCATTCACTTAAAGGAACACAACCAGCAGCAATGCTGAGACTACCTTGCTACTGCTGCGCTCAAGGCTGCAAGAACAACATTAACCACCCAAGAGCAAAGCCATTGAAAGACTTTAGAACACTTCAAACCCACTACAAAAGGAAGCATGGAGCAAAGCTATTCATGTGCAGGAAATGTGCGAAAGCATTTGCTGTCAAAGGAGATTGGAGGACACATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACCTGTGGTTCGGATTTCAAACACAAAAGATCACTCAAAGACCATATTAGATCCTTTGGGAAAGGTCACTCACCTCATCCTTCTCTTGAAGGTTTTGATGACAGCATAACCGGATCGGAGGATGAAACTACTAATACACGCGATGATTACAACAAGTAA 951 0.4259 MGLRDYCNVEDKNMSFHTPTFIEWLRPSAFPNSSSVTSSSPSSPLLSCTAQQQEFATQTIQFLPVISDLRDLNPLKEEIVVRQNELPGKPAEQVTVALHIGLPNTDDWDITRKVLDVKEEPVKRSTNGRSFNTERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPHSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKLFMCRKCAKAFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFDDSITGSEDETTNTRDDYNK* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01318 316 Gene3D Classic Zinc Finger 151 174 - -
Pte6g01318 316 PANTHER ZINC FINGER PROTEIN WIP2 31 304 IPR043584 GO:0003700|GO:0010468
Pte6g01318 316 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Pte6g01318 316 SUPERFAMILY beta-beta-alpha zinc fingers 121 175 IPR036236 -
Pte6g01318 316 MobiDBLite consensus disorder prediction 282 316 - -
Pte6g01318 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Pte6g01318 316 FunFam Zinc finger protein WIP2 205 287 - -
Pte6g01318 316 SMART c2h2final6 199 231 IPR013087 -
Pte6g01318 316 SMART c2h2final6 152 174 IPR013087 -
Pte6g01318 316 SMART c2h2final6 236 256 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01318 Pte-Chr6 31282835 31285457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01318 8 298 C2H2 Transcription Factor Family AT1G08290 55.325 3.92e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte6g01318 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01318 - - tcc:18590338 455.292