Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01297 ATGGAACCTCCGGTAGTCAGATCAAGAGGTCGCCCAAGGAAAAGAAGGAGAGAGGAAGATGAGATTGATGTGCATGACCGGAAATTGGGTCTGGAATCGAAGAGTCAGGCTGCGCTGTCGAAGCCCGTAGTATTAGTTGGACGATATGTGTTGAAGGATTTCAATCGGAACGGGCTTTTTCTAGGTAAAGTTGTATTTTATGATACTGGCCTATACCGAGTCAATTATGAGGATGGTGATTTTGAGGATCTTGAAAGTGGTGAGATTCGTAGAATCCTTCTTAGGGATATTGATTTTGACGATGATCTGACTCAAAGGAGGATCAAATTAGATGAGATTGTGTTACAGTGTGATGTTCTGATTGAAAATAAGTCGGACCAAAAGCCACCTTCTGCTGATGCATCTCTCGGTGCTAGCAGAGCTAATGTATCCGGATTGAATGAGCTAAGTGGTGAAACATCTAATGAACATAATGAAGAACAAGTTGAGGCTGATGATGATTCTTTTAGTGATTCTAGTGTGGGGGCCAAGGGAAGTGGTCATGATCTCAATCCCCAGGCAATATCAATTCCTCCATTGCAGTTTTTGCCATCTTCTGGAACTATTGGTGTTCCTGAGCAGTATGTCTCACTTCTTCTTTCAGTTTATGGATTTCTGCGATCCTTTAGCTTCCGACTGTTCTTGACTCCTTTTTCCATGGATGAATTTGTGGGATCACTTAATTGTTGTCTGGCAAACACGTTGATTGATGCCATTCATGTTTCCCTGTTGCGTGGCTTGAGAAGTCATCTTGAAATGTTGTCATCAGAAGGTTCAGAGATTGCTTCAAATTGTCTGAGGTGCAGTGATTGGAGCTTGCTTGATATATTGACTTGGCCTGTATATGTAGTTCAGTATTTGACAATCTATGGTTATGTAAAGGGACCACAGTGGGATGGATTCTACAATGAGGTCTTCGATAGGGAGTATTATTCACTAGCAGTTGGCAGGAAGTTGATGATATTGCAAATCTTGTGTGATGATCTTTTAGATTGGAAAGAGCTAAGAACTGAACTTGACACACGTGAATTAGCAGAAGTTGGAAGTGATTATGAAGCAGAAGATCCTTTTGCTCCTGAAAATGGGCCTAGAAGAGTCCATCCAAGAAATGCCAAAACTTCCGCCTGCAGGGACAGATATCCTCTGAATATGATTTCAGAATCCTTGGATCTGAAAGATAGTAATGGAAGTGTCGATGCTGATGTTGATAGAAATGGGGATGAATGCCAGCTTTGTGGAATGGATGGGACTTTGTTATGCTGTGATGGATGTCCATCTGCATATCACTCTCGGTGTATCGGTGTGATGAAGTCATTTATACCACCAGGGCCATGGTATTGTCCTGAATGTAAAATAAATAAAGCTGGTCTTACTATTGCAAAAGGAACACATCTCAGAGGAGCAGTGTCATTTGGAATGGATATATTTGGGCATTTCTTCATCACTAGCTGTGACCACTTATTAATAATCAAGGCATCCAATGATGGTGAATTTTGTCTCAGATATTATAATAAGAATGATATACCTAAAGTTCTTCAAGCACTTTGTTCGTCTCCACAGCATAGAGCTATTTACTTTGATATTAGCCAGGCAATTTTGCTGTATTGGAATTTTCCAGGAAGTTTATTATCCCTCATGGAAATGACTGGAGCAGATAGGTTAGCAAGTGAAAGGAAAGGTGCAGACCTTTCAAGTTTGTTGGTTTCTTCTGTAGATAAGGAAGAGTACCGTGTTGTGTGTATGGGAGGGGTGGAGAACTCTGAGTCCACTCTAAATGAGAGTAAGGATGGTATAATATCTTGTCTTGATTCCTTATCGGGTTCACTTAAAAATGAACTTTCTGGTCCTGAAATACATGGTGAATCTAAGATAGAGGATTGTGCAGTTTTGAACAATAAGCTTCCTGAGGGGATCATATTGGAATACTCCTCCAACTCTGGTTCTGGTAGCTGTCAAACTGATATGTTAAAATTGATGCATGATACTAGATCTAGTGCACAAGATCAATCTACTTGCATATCTATCAGCAGCAGTGAGAGTTTTCACGGTAATCCAAATGGTACCTCTTTGCCAGTGAATGGGTCTTCCAAGTATGAAGAAGCCAGTTATGTTGGTTCTGAGAATTTGGATCCCTCTTTAATTGATGGCTCTGTGTACTCGGGTTCTTCATTCAAACGCCATTCATACATTAACTATTACGCACATGGTGATCTCGCTGCATCTGCTGCTGGCAAATTGGAGGCTATTTCTTCTGAGGAATCTCGAATTTCAAGCTCTGATAATTCTAGGAAAACTGCATCTGTAGTCATTGCGTTACAAGCAAAAGCATTCTCTTTAACAGCTTCTCGCTTTTTCTGGCCAACCTTTGAAAAGAAGCTTGTGGAGGTACCTAGGGAGAGGTGTGGCTGGTGTTTTTCATGCAAGGCTCCTGTTTCAAGCAAGAGAGGATGCATGCTAAATCATGCAGCCTTAAGTGCCACAAAAGGTACTATGAAGGTACTTGCTGGTCTTCGTCCTGTAAAGAATGGGGAAGGGAACCTTTCTAGCATTGCAACTTACCTAATATACACAGAAGAGTCTCTGCATGGTCTAACAGTTGGCCCTTTTAGAAGTGGAAGTTTCAGAGAGCAATGGCGCAAGCGTGTAGAGCAGGTTACAACGTGCAGTGCTTTAAAACATCTATTGCTTGAACTTGAACAAAATGTTCGTGCTATTGCACTTGCTTCTGATTGGTTCAAGATGGTGGATGATTGGTTCATTGAATCTTCTGTAATTCAAAATTCTGCATGCAACGGTGGAGTTGGAGCAGCAAACAGACGTGGATCAAATTCAAGGCGTAACAGGAAACAGGCGACAATTGAGGAAGTTATGGCCGACGATTCCAACGATGGAAATTTTTTCTGGCAGCGAGGAAAATTGTCAAGATTTTTATTCCAGAGAGCAGTTTTACCGCGCTCCATTGTCAGAAAAGCAGCTTGCCAAGGGGGATCAAGGAAGATTTCTGGAATTGCTTATGCTGATGGATCAGAGCTTCCCAGGAGAAGTAGACACTTAGTCTGGCGAGCTGCAGTTGAAATGAGCAAGAATACATCCCAACTTGCACTCCAGGTCAGGTATTTTGATTTTTATTTGAGGTGGAATGATCTTATTCGTCCTGAACAGAATGGTCACGATGGAAAAGGTCCAGACACTGAAGCTTCTGCATTTAGAAATGCTGTCATTTCTGACAAAAAACTCGTGGAGAATAAGATTTTGTATGCTGTTGCTTTTGGGAGCCAAAAGCATCTTCCTTCACGCGTCATGAAGAACATTGTTGAAACTGAGAAATTCTTGGGAGATGAGAAGTATTGGTTTTCTGAATCACGCATACCTTTATACTTGATAAAGGAGTACGAAGTAAGAGCGGATAAACCAGCATCATCTGAAGAGCGATTGACCTTGTTACCGAAGTTGCATAGTAGGAAGTGGAGACCCATGTACAAGGACATATTCTTTTATCTTACATGCAAGAGAGACAATCTGGATATGTGTTACTGTTCTGCCTGCCAACTTGTTGTTCCAGTCAGAGATACTGTGAAGTGCAGTGCATGTGAAGGTTATTGTCATAGGGAGTGTACCGTGAGCTCAACTGTTTCAACAAATGAGGAAGTAGAGCCTTTGTTCAAGTGCAGGCGGTGCTACCAAGCCAAAATATTTGCCCAGAATGAGACCAACAATGAATCTCCCACTAGTACTCTGGTCTTCCATGGACAGGGTCATAACTTGGGGTCAACTGCCAAGTGTACAAAGATCAAACTTTATAATCAGTCATTAATTTCTAGACCTCAGGATACTCCTTCTGAGGTGAAGACAGGAACTCCTATTCCGATTTCAACAACAAAAAGTCAACGCAAGCAAAAAGGTGCTTCTGCTTCTGGTTTGACAACTAAAAGCAAATGCAGGGATCAAGGTCCTTCTGATTCAAGTGTTTCAGCAAAAAACAGACGGAGACCATGTTCATGGGGCATCATCTGGAGAAAAAAGAATGTGGATAACGATGGCATTGATTTTAGGCTTAAGAACATTCTTCTAAGGGGAAGTTCTGATGCACATCACGTGGAAGCAATTTGTCTACTATGCCGGAAGCCATATAGGTCGGACTTGATGTATATTTGTTGTGAAAAATGCAAAAATTGGTACCATGCTGATGCTGTTGAACTTGAAGAATCAAAATTTTTTGATGTCGTTGGTTTTAAGTGTTGCAAGTGCCGCAGGATAAAATCTCCTGTGTGTCCCTACTCTGATCTGAAAGACAAGAATCTACTGGATGAAAGGAAGATTCATATGAGGCCTTTGCAGCAAGAACAATCTGTAGTTGATTCTGATTCTGGAGTCATCTCCGATTATAAAGAGTCTGAACCTGCTACTCCGATATTTCCTGGGGAGGAAGTGACAGAACAAGATAATGATCCTCTGCTCTTTTCTCTGGAAAGCGTTGAGCTGGTTACAGAGCCGAATCCAGAAATGGATACTGAATGGAATGACGTTTTTGAGCCAGGGCCTCAAAAACTACCAGTTCGTAGGCATTTGAAGCGTGAGGGAGATGACAATGATCTTTTTGAAAGCCAACCCCATGCTGCATTTGAGGCAAATCTAGAGTCATATCTCAATCCTGCAGATGATGTTTCATCTTATAATACAGAAGACTGCTCCATAGCTTGCACAGACATTAATATGATGAACGACTGTGAAAATGTAAATTACGATGACATGGAGTTTGAACCTAATACGTACTTCTCTGTCACTGAGTTGTTGGAACAGGATGACGGCGACCAGTTTAATGAAGTGGATATAAGTGGGATAGTCCCACAGCACATGCTCTCCGAAAATGGAATAAAGGAAAAATGTGAAATGGGTACTGATATTCAGAGATCTGAAAATTTAAACATCATAAAAGTTAGCATTCCACAGTGCTGGAGGTGCTCACTGAATGAACCGTCCCCTGATTTATCATGTGAGATCTGTGGGCTATGGATACATAATCACTGTTCACCGTGGGATGAGTCTGCATATGGGTCGGGATGTTGGAGGTGTGGCAATTGCCGTGAATGGCGTTGA 5136 0.4161 MEPPVVRSRGRPRKRRREEDEIDVHDRKLGLESKSQAALSKPVVLVGRYVLKDFNRNGLFLGKVVFYDTGLYRVNYEDGDFEDLESGEIRRILLRDIDFDDDLTQRRIKLDEIVLQCDVLIENKSDQKPPSADASLGASRANVSGLNELSGETSNEHNEEQVEADDDSFSDSSVGAKGSGHDLNPQAISIPPLQFLPSSGTIGVPEQYVSLLLSVYGFLRSFSFRLFLTPFSMDEFVGSLNCCLANTLIDAIHVSLLRGLRSHLEMLSSEGSEIASNCLRCSDWSLLDILTWPVYVVQYLTIYGYVKGPQWDGFYNEVFDREYYSLAVGRKLMILQILCDDLLDWKELRTELDTRELAEVGSDYEAEDPFAPENGPRRVHPRNAKTSACRDRYPLNMISESLDLKDSNGSVDADVDRNGDECQLCGMDGTLLCCDGCPSAYHSRCIGVMKSFIPPGPWYCPECKINKAGLTIAKGTHLRGAVSFGMDIFGHFFITSCDHLLIIKASNDGEFCLRYYNKNDIPKVLQALCSSPQHRAIYFDISQAILLYWNFPGSLLSLMEMTGADRLASERKGADLSSLLVSSVDKEEYRVVCMGGVENSESTLNESKDGIISCLDSLSGSLKNELSGPEIHGESKIEDCAVLNNKLPEGIILEYSSNSGSGSCQTDMLKLMHDTRSSAQDQSTCISISSSESFHGNPNGTSLPVNGSSKYEEASYVGSENLDPSLIDGSVYSGSSFKRHSYINYYAHGDLAASAAGKLEAISSEESRISSSDNSRKTASVVIALQAKAFSLTASRFFWPTFEKKLVEVPRERCGWCFSCKAPVSSKRGCMLNHAALSATKGTMKVLAGLRPVKNGEGNLSSIATYLIYTEESLHGLTVGPFRSGSFREQWRKRVEQVTTCSALKHLLLELEQNVRAIALASDWFKMVDDWFIESSVIQNSACNGGVGAANRRGSNSRRNRKQATIEEVMADDSNDGNFFWQRGKLSRFLFQRAVLPRSIVRKAACQGGSRKISGIAYADGSELPRRSRHLVWRAAVEMSKNTSQLALQVRYFDFYLRWNDLIRPEQNGHDGKGPDTEASAFRNAVISDKKLVENKILYAVAFGSQKHLPSRVMKNIVETEKFLGDEKYWFSESRIPLYLIKEYEVRADKPASSEERLTLLPKLHSRKWRPMYKDIFFYLTCKRDNLDMCYCSACQLVVPVRDTVKCSACEGYCHRECTVSSTVSTNEEVEPLFKCRRCYQAKIFAQNETNNESPTSTLVFHGQGHNLGSTAKCTKIKLYNQSLISRPQDTPSEVKTGTPIPISTTKSQRKQKGASASGLTTKSKCRDQGPSDSSVSAKNRRRPCSWGIIWRKKNVDNDGIDFRLKNILLRGSSDAHHVEAICLLCRKPYRSDLMYICCEKCKNWYHADAVELEESKFFDVVGFKCCKCRRIKSPVCPYSDLKDKNLLDERKIHMRPLQQEQSVVDSDSGVISDYKESEPATPIFPGEEVTEQDNDPLLFSLESVELVTEPNPEMDTEWNDVFEPGPQKLPVRRHLKREGDDNDLFESQPHAAFEANLESYLNPADDVSSYNTEDCSIACTDINMMNDCENVNYDDMEFEPNTYFSVTELLEQDDGDQFNEVDISGIVPQHMLSENGIKEKCEMGTDIQRSENLNIIKVSIPQCWRCSLNEPSPDLSCEICGLWIHNHCSPWDESAYGSGCWRCGNCREWR* 1712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01297 1711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 476 IPR013083 -
Pte6g01297 1711 SUPERFAMILY FYVE/PHD zinc finger 410 468 IPR011011 -
Pte6g01297 1711 SMART testlast3 206 266 IPR018501 -
Pte6g01297 1711 CDD Tudor_AtPTM-like 46 94 IPR047365 -
Pte6g01297 1711 Pfam DDT domain 208 262 IPR018501 -
Pte6g01297 1711 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 320 353 IPR028942 -
Pte6g01297 1711 PANTHER PHD FINGER FAMILY PROTEIN 42 1675 - -
Pte6g01297 1711 MobiDBLite consensus disorder prediction 148 181 - -
Pte6g01297 1711 ProSiteProfiles Zinc finger PHD-type profile. 419 466 IPR019787 -
Pte6g01297 1711 MobiDBLite consensus disorder prediction 1288 1340 - -
Pte6g01297 1711 MobiDBLite consensus disorder prediction 1 21 - -
Pte6g01297 1711 SMART PHD_3 1191 1240 IPR001965 -
Pte6g01297 1711 SMART PHD_3 1663 1708 IPR001965 -
Pte6g01297 1711 SMART PHD_3 1382 1430 IPR001965 -
Pte6g01297 1711 SMART PHD_3 421 464 IPR001965 -
Pte6g01297 1711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1371 1444 IPR013083 -
Pte6g01297 1711 CDD PHD_SF 1382 1429 - -
Pte6g01297 1711 SUPERFAMILY FYVE/PHD zinc finger 1374 1436 IPR011011 -
Pte6g01297 1711 Pfam PHD-finger 422 464 IPR019787 -
Pte6g01297 1711 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1198 1229 IPR017896 -
Pte6g01297 1711 ProSiteProfiles DDT domain profile. 206 266 IPR018501 -
Pte6g01297 1711 ProSitePatterns Zinc finger PHD-type signature. 422 463 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01297 Pte-Chr6 31112465 31120646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01297 296 575 EF-hand Containing Proteins AT5G22760 46.259 2.05e-74 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pte6g01297 DDT 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01297 - - qsa:O6P43_000416 1816.59