Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01280 ATGGCTATTGCTGGTCTACACAATGTTTCTGTGCTTGATTCTTGTTTCCTTGGAGGCTCTCGCTCTCGGCGCAATGATGGAGGGATGGGAAGCACCCGAGGATCCTCACTCTTGCAAATGTGGAGAGAGTTTGAGGAAGAGCACATGGTGAATCAAGCACGAGAAAGATCTCCAGATCAACTGAACAGGACTGATGGTTTGATCAATGTTCTGTCTCCAGTTAACGTGTCTGACAGCAATAGGACTGAACGCAGGAATCATCAGGAGAATGCATCATTAGGCATGATTGAGTGTGAAACATGGTCTGAAAGTCGAAATGGATCACACGACGAGCATGAGGTGTCCAGCAATTCCAGTTGTGAGAATTCTTCTGATTTTGGGGAAGCTGAAAGGGAAAGAGTGAGGCAAATTTTTAGGGAGTGGATGAATAGTGGTATAAGGGAACATTCATCAAATACTTCCACAGTGAATAACAGCTCAAGGGCAGAGTGGCTTGCTCAAAATGAGCAGGAGAGGGTCAGAATCATAAGGGAGTGGGTAGAGATGAATAGTCAACAACGAGGTCCCCCTGGTGTTAATATAGAGGAGCAATCTACTGAAGTTGGATCCCAAATTGGACGTATCAGTGATGAACCGGCTTTGAACCAAAATGATGGCCACATTCATCACAATGAGATGGTGCGGAAGGGTATCCGTAAATTACGAGGGAGGCAGGCTCTCCTTGATATGCTTAAGAAAGCTGAGAAGGAAAGGCAAAGAGAACTTCAAGAATTGATGGAGCAACGAGCTGTAACTCGTTTTTCTCATCGCAACAGAATTCAGGCACTACTCAGAGGTAGGTTCTTGCTTAATGGTAGATTGACCGAGAATATCAGACCCAGTTCGACTGCAGAGAGTGAGTTGGGTTTCTTGAGGCAAAGACAAACAGTGTCTGGCTTAAGGGAAGGAGTTTTCTCCCGTTTAGATGATTCTGGTTCTGTTCAATTGACCAACAACCAATGTGAAGCATCATCTAGTACTGACATGGATACTGCTATAATTGAACACGCAACGGGTGGCAACTTGTTGGTACTTAATGAGCATCTACCACCTCCGGAGTCAAACAATGTACAGAATTGTAGTCCTCAGTTGCTTGATGGGAATTACTTATGTGCAACTAGGAGGATTAACACAGAACGGGAAGAATCAGCTCTTTATGTGGACCTGGTGCATCAATCAGTACTGGGGTGTGAGTTAAGAGACGGGCATTCAGTATCAGCAAGAATAAATTACGAGCAAGGTGTTGATGAGATTCGAGATTTGTTTAACTTCGATGAACAATACCCGAATACTCTACAAATTAAATGGACCTCCCAAAATGAGCAATCGAGCTCGACTATTGAACTTGTTGAAAGAAGAAAGATGTTTGATGGGACTTCACACAATGCGCCTTCTAGTAATTTAAGAGATCAGCAGTCACCAGCTACTGAATTTCTGGAAAGGACAGATGAAAATGAAGAAAATTCCAGTAGAACTTCAACAAGGGGACTCGGAGAAAATGGAGAACAGGATAATATGGGAAATCTTAGTGACATATCCAATGAACCTTTTGAAATGGGAGATGAAAGTTCTGATGCTGGTGGATTTCCGAATCATTCCCGTGTTGCGGAGAACTATGAGTCAGTTATGATGGTTCCAGAATCTACATTGCGGGAAGGACGTCTGCAGGAAGAAGTCCTTGAAAATGTAGGAAATGTCGGGCAACGAAGGACCATTGAATATAATGACTGGATAGAGAGCAGTGAAGGACACATGAGTGAGCATAGGCAAAATAACAATGCTGGTGAGTGGTCTCAACACATGTTGGGAAATGGAGATGGGGATATCCCTCATCTGCAAGTAGCCCCTGAAACATGGAATGAAGATCATGGTTTCCAAGAGGCTGTGCAGAATTGGTTGGGAAGGTCTGACCATGAAGCTTTTCGTATTAGCAGAGTCGATGCATTTCACTTTCCCGATGATGACAATGTGTACCGTATGGAACTTAGGGAACTGCTAAGTAGGAGGAGTGTCTCCAACCTTCTTCAAAGTGGCTTTCGCGAGAGTCTTGACCAATTGCTTCAATCATATGTTGAAAGGCAAAGTCATGCTTATGTTGATTGGGAGTTGCATGAAGACACCACTTCTTCAGCACCAGCTGAACTAGATTTGGATCAACAGAGCAGGGATCCTGGAGTTCATCCTGATAATGCAGCACATGGTCCTGACGACATACCTGTTCCACCAACTCCACCTTCTCAGCCTCTCTGGGACAGGCATCCCCGGTATCGTCACGAGAGTTGGCCAGTCAGCAATCAGCGTTTTGGAATAGAATGGGACATCATAAATGACTTGAGGATTGACATGGCTATGCTACAGCAGAAGATGAATGACATGCAAAAAATGATGGAGACTTGTGTGGATATGCAGCTTGAGTTGCAGCGCTCCATAAGACAAGAAGTATCTGCAGTTCTTAATCGCTCAAATGTTTCACCAGGTACAAATGAAGAACTTCCGGTGGATAAGTCTAAGTGGGAATATGTGAGGAAAGGAGTTTGCTGTATATGTTGTGAAAGTAATATTGATTCTTTGTTGTACAGATGCGGACACTTGTGTACATGTTCAAAGTGTGCGAATGAATTGATGCGCCGTAGACAAAAATGTCCTATGTGTCAAGCACCAGTTGTAGAGGTTATACGTGCTTATTCTATACAGTAA 2736 0.4375 MAIAGLHNVSVLDSCFLGGSRSRRNDGGMGSTRGSSLLQMWREFEEEHMVNQARERSPDQLNRTDGLINVLSPVNVSDSNRTERRNHQENASLGMIECETWSESRNGSHDEHEVSSNSSCENSSDFGEAERERVRQIFREWMNSGIREHSSNTSTVNNSSRAEWLAQNEQERVRIIREWVEMNSQQRGPPGVNIEEQSTEVGSQIGRISDEPALNQNDGHIHHNEMVRKGIRKLRGRQALLDMLKKAEKERQRELQELMEQRAVTRFSHRNRIQALLRGRFLLNGRLTENIRPSSTAESELGFLRQRQTVSGLREGVFSRLDDSGSVQLTNNQCEASSSTDMDTAIIEHATGGNLLVLNEHLPPPESNNVQNCSPQLLDGNYLCATRRINTEREESALYVDLVHQSVLGCELRDGHSVSARINYEQGVDEIRDLFNFDEQYPNTLQIKWTSQNEQSSSTIELVERRKMFDGTSHNAPSSNLRDQQSPATEFLERTDENEENSSRTSTRGLGENGEQDNMGNLSDISNEPFEMGDESSDAGGFPNHSRVAENYESVMMVPESTLREGRLQEEVLENVGNVGQRRTIEYNDWIESSEGHMSEHRQNNNAGEWSQHMLGNGDGDIPHLQVAPETWNEDHGFQEAVQNWLGRSDHEAFRISRVDAFHFPDDDNVYRMELRELLSRRSVSNLLQSGFRESLDQLLQSYVERQSHAYVDWELHEDTTSSAPAELDLDQQSRDPGVHPDNAAHGPDDIPVPPTPPSQPLWDRHPRYRHESWPVSNQRFGIEWDIINDLRIDMAMLQQKMNDMQKMMETCVDMQLELQRSIRQEVSAVLNRSNVSPGTNEELPVDKSKWEYVRKGVCCICCESNIDSLLYRCGHLCTCSKCANELMRRRQKCPMCQAPVVEVIRAYSIQ* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01280 911 Coils Coil 237 264 - -
Pte6g01280 911 MobiDBLite consensus disorder prediction 74 128 - -
Pte6g01280 911 MobiDBLite consensus disorder prediction 504 525 - -
Pte6g01280 911 MobiDBLite consensus disorder prediction 472 488 - -
Pte6g01280 911 MobiDBLite consensus disorder prediction 470 544 - -
Pte6g01280 911 Coils Coil 788 808 - -
Pte6g01280 911 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 428 911 - -
Pte6g01280 911 SUPERFAMILY RING/U-box 848 904 - -
Pte6g01280 911 MobiDBLite consensus disorder prediction 731 764 - -
Pte6g01280 911 MobiDBLite consensus disorder prediction 489 503 - -
Pte6g01280 911 ProSiteProfiles Zinc finger RING-type profile. 859 898 IPR001841 -
Pte6g01280 911 MobiDBLite consensus disorder prediction 748 762 - -
Pte6g01280 911 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 837 909 IPR013083 -
Pte6g01280 911 CDD mRING-HC-C3HC5_NEU1 859 908 - -
Pte6g01280 911 Pfam Zinc finger, C3HC4 type (RING finger) 857 903 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01280 Pte-Chr6 30946600 30950853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01280 859 905 C3H Transcription Factor Family AT3G06140 42.553 6.53e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01280 - - qsa:O6P43_028447 783.097