Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01279 ATGGGGATCCAGTACTCAGAGAAGTACTTCGATGACACTTACGAGTATAGGCACGTGGTACTGCCTCCTGATGTTGCTAAGCATCTGCCAAAGAATCGTCTTCTCTCTGAAAATGAATGGCGTGCAATTGGGGTTCAGCAGAGCCGAGGATGGGTTCATTATGCAATTCACCGCCCTGAGCCGCACATCATGCTTTTCAGGAGGCCTCTCAATTATCAGCAGCAGCAGGAGAACCAAGCCCAGCAGGGGTTGCTGGTTAAGTGA 264 0.5038 MGIQYSEKYFDDTYEYRHVVLPPDVAKHLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQGLLVK* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01279 87 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 5 23 IPR000789 GO:0016538
Pte6g01279 87 SMART CKS_2 2 71 IPR000789 GO:0016538
Pte6g01279 87 SUPERFAMILY Cell cycle regulatory proteins 2 81 IPR036858 GO:0016538
Pte6g01279 87 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 82 - -
Pte6g01279 87 FunFam Cyclin-dependent kinases regulatory subunit 1 83 - -
Pte6g01279 87 Pfam Cyclin-dependent kinase regulatory subunit 3 69 IPR000789 GO:0016538
Pte6g01279 87 Gene3D - 1 82 IPR036858 GO:0016538
Pte6g01279 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 39 53 IPR000789 GO:0016538
Pte6g01279 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 54 68 IPR000789 GO:0016538
Pte6g01279 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 2 16 IPR000789 GO:0016538
Pte6g01279 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 17 31 IPR000789 GO:0016538
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01279 Pte-Chr6 30939136 30939915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01279 1 79 Core Cell Cycle Gene Families AT2G27970 86.250 2.70e-48 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01279 K02219 - gmx:547737 167.162