Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01278 ATGGAAGTTGGCATAGAAGAGTTATTGGGATCGTCTAGCGACGATTTCAGTCAAATTGCCAAAGGGAAGAGGACCAAAAGGTTAAGGTTGCAGTATCCAAATGGTGGAGACAACACCATGATGACTTGTTGCTCCTCAAGTACTGCTGCTGATGCTGGCGATTGTGGTTCGTTTTCGTCTACAGCAACCTGCAACTACGAGATCACTGAAGTTGAAGAGGACATGGCTAACTGCTTGATTCTATTGGCTCAAGGTGATTCACAAAAGCAAGCAGCTGAAGAGGGCGGGAACAACACAGAGAAGTTTAGCAGCAGAAGATTCGCTAACATAGCCACAACAAGTCCAGCTTGTAAGACCGGTATCTTTGTGTATGAGTGCAAAACATGTAACCGCGCTTTCCCTTCATTTCAAGCACTAGGAGGTCACAGGGCAAGTCACAAAAAAACAAAGGTTGACGAGAAGAAGTCGTCACCAGCAGCAACGACTCTGCTATCTAATGATGATCACGAAAATTTGGACTCGATCAAAATCAACACGACAAGCCCTCCTCGAACTCCTGTTCTGTTGCTTGCAGACGTTGGTACAGGAATCAATCAGAATAGGGTAAAGATTCATGAGTGTTCTATATGTGGATCAGAATTTTCATCTGGGCAAGCATTGGGTGGACACATGAGGCGGCATAGGGCAGCAACAAGCACTGGTCCAACGGTGGGGTTAAACGTCTGTGGCAATAGTACTTCTAGTGCTACTCCTACGAAGAACAAGTCAAGAAACACTTTAGAGTTGGATCTAAACCTTCCTGCACCTGAAGACAACAACCGGGATTCAAAGTTTCAGTTTGCTTCAACACAACGATCACTGGTCCTGTCTACCCCTGCCTTAGTAGATTGCCATTATTGA 900 0.4533 MEVGIEELLGSSSDDFSQIAKGKRTKRLRLQYPNGGDNTMMTCCSSSTAADAGDCGSFSSTATCNYEITEVEEDMANCLILLAQGDSQKQAAEEGGNNTEKFSSRRFANIATTSPACKTGIFVYECKTCNRAFPSFQALGGHRASHKKTKVDEKKSSPAATTLLSNDDHENLDSIKINTTSPPRTPVLLLADVGTGINQNRVKIHECSICGSEFSSGQALGGHMRRHRAATSTGPTVGLNVCGNSTSSATPTKNKSRNTLELDLNLPAPEDNNRDSKFQFASTQRSLVLSTPALVDCHY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01278 299 SMART c2h2final6 205 227 IPR013087 -
Pte6g01278 299 SMART c2h2final6 124 146 IPR013087 -
Pte6g01278 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
Pte6g01278 299 MobiDBLite consensus disorder prediction 230 260 - -
Pte6g01278 299 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Pte6g01278 299 MobiDBLite consensus disorder prediction 233 260 - -
Pte6g01278 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Pte6g01278 299 MobiDBLite consensus disorder prediction 143 167 - -
Pte6g01278 299 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Pte6g01278 299 SUPERFAMILY beta-beta-alpha zinc fingers 123 227 IPR036236 -
Pte6g01278 299 Gene3D Classic Zinc Finger 98 181 - -
Pte6g01278 299 Gene3D Classic Zinc Finger 193 237 - -
Pte6g01278 299 PANTHER ZINC FINGER PROTEIN ZAT5 62 282 - -
Pte6g01278 299 Pfam C2H2-type zinc finger 205 229 - -
Pte6g01278 299 Pfam C2H2-type zinc finger 123 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01278 Pte-Chr6 30930680 30931872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01278 7 300 C2H2 Transcription Factor Family AT5G04390 37.467 3.35e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte6g01278 zf-C2H2_6 1.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01278 - - qsa:O6P43_000387 304.293