Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01277 ATGATGATCAATTGTTTTTGTTTTTTAATCTGGTGTCAGGTTCAACAGTACTGCATGAATTGTGGAGTTTGCATGGGGAAGTACTTTTGTGCTGTATGCAAATTCTTCGACGATGATGTCTCGAAGAATCAATACCACTGTGATGAATGTGGAATCTGCAGAACCGGTGGGAAGGAGAATTTTTTCCACTGTAACAAATGCGGATGTTGCTACTCTACGTTAATCAAAAACAGTCATAGGTGTGTGGAAGGAGCAATGCATCACGATTGTCCAGTTTGCTTTGAGTTTCTCTTTGATACACTGAAAGGCATCACTGTCTTACCTTGTGGACATACTATGCATCTGCAATGTGTTAAAGAGATGGAGAAACATCATAGGTATTCCTGTCCTGTTTGCTCAAAATCCATATGTGACATGTCCAGTTTGTGGAGAAAGCTTGATAGTGTGATCGCCTCAACTCCGATGCCTGAAATGTACCAAAATAAGATGGTGTTGATACTTTGTAACGACTGTGGAGCCAACTCTGAAGTCCAATTCCACGTTGTGGCACATAAGTGCCTCAACTGCAAGTCTTACAACACTAGACAGACACGAAGTGGCCCTGCTAATTCATGTACAATGGCTGACATGGTGAGATAG 639 0.4163 MMINCFCFLIWCQVQQYCMNCGVCMGKYFCAVCKFFDDDVSKNQYHCDECGICRTGGKENFFHCNKCGCCYSTLIKNSHRCVEGAMHHDCPVCFEFLFDTLKGITVLPCGHTMHLQCVKEMEKHHRYSCPVCSKSICDMSSLWRKLDSVIASTPMPEMYQNKMVLILCNDCGANSEVQFHVVAHKCLNCKSYNTRQTRSGPANSCTMADMVR* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01277 212 ProSiteProfiles Zinc finger RING-type profile. 90 133 IPR001841 -
Pte6g01277 212 SMART ring_2 90 132 IPR001841 -
Pte6g01277 212 ProSiteProfiles Zinc finger CTCHY-type profile. 25 89 IPR017921 -
Pte6g01277 212 SUPERFAMILY Zinc hairpin stack 26 83 IPR037275 -
Pte6g01277 212 SUPERFAMILY RING/U-box 89 136 - -
Pte6g01277 212 Gene3D - 161 201 - -
Pte6g01277 212 Pfam Zinc-ribbon 137 195 IPR039512 -
Pte6g01277 212 Pfam Ring finger domain 89 132 IPR001841 -
Pte6g01277 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 152 IPR013083 -
Pte6g01277 212 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01277 Pte-Chr6 30921622 30924346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01277 22 199 C2H2 Transcription Factor Family AT3G18290 42.222 9.18e-42 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01277 K10144 - rcu:8275237 380.948