Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01252 ATGAGCGGTTTAAGGCAGGAGTCGCATGTAGCACAACAAAGTCGGCGTGAAAAGCTGAGAGTGCTGCAACATGGTTCAACATCATTTCACCATTTCCAGGATTTCCCTACTGATTTGCAACAAATATCAACTACACAAGATTTAAACTCTGATCTTTTAGAAATTAGGAATGTAAGGAATGACAATGTGCTATATGAGTCGGGTTATTGTTCCTCAGGAATGATGAATTTTTCAGCTTGCTCGAATGCTAATCCCTCATCCATTCAAAAGGAAGCGATAGCGTCGCCAGAATTCTTGGCTGCTCAACCTGGTAGACTGATACTCTCAGATCGTTTTGCTCCTTTTTCACACTCTTCCAGTGCTAATGAGGGAAACTATGAGTCTCATAACTTTGGAGGTTGGAAGAACATTGATCCTGGAACACAGCATACTTTCGATAGTTTGGTGAATTATGCAAGTGAAGTGGCAGGTAACATGAATGATAGTGATCGTGATTGTATGTTTGTTGGGCAAGGAATTAACCTTTCTCCATCTTACCAACACTATTCTAAGACTATTGACAATCGACTCCAAGATGCGCATGCTTCTTTAAGCAATCTTTCTGGCGGAGTTTCCAGTCAGCAAAGTCACAAGCAGCTGGGGGGACTGAATCATATTCCTTATGCTACTCCACTTTACCAAAGTACTCTTCAAGATATTGTTAAGTCAGCTTCTGCAAGTAGTGAACGAGGGAAAGAAATTCATTCACTTGTGCAGCGTACTACAAGAGAAGGTGACAGTAGCACTTGTATTGACAGTGGTAATGAACTTCTGCTTCTTCCGTCCTATGGGAACCAATCAAACATGTCACGTTACGACGGTACAGACACATGGATGGATAGATCAATAGAGAGTTGTCCTCAGTGGGAAGGTTCCCAAGCTCGAGGCATTGTAGCTCAAATGAACGAACACGGATCACCGTATACTGCCAGTGATTTTAATCCTCAACGCCTTTCTCTATCGCTGTCTTCTAATCCACAAGCTAATAAACATTCTGCAATACAACCTAGAGGAGAATCTGGATCAGTAGACCTGCAGTCTGGAATTGATAATTCTAAGGATCCTCAACGATTGAAATCTTCCCCCAGTGGTAAAGGTTGTAGCGTGGTGGGGACGTCAGCTAATATTGGTTATCGAAGTATGGGTCCTCTAGGCCCTTTTACAGGATACTCAACCATCCTTAAGAATTCCAGATTCTTGAAGTCTGCCCAACAGCTGTTGGATGAGTTTTGCATCTTGGATGGTCCAAAGCTCGAGAAAACTTTTGATGTCATTGAGATTAATTCTGCAATAGGAAGTGCTTCTACTTCAGCAGATACTAGCAACGGCATTGATAATGATGCTTCTCTAAGAGAAAACACTTCAGGTGCCTCCTCCTCCAAGGTATGCCGTTCAAGTGATACTAGGAATGAAGTTGGAGTCGCTAGCAGCTTTCATGGATCATTTCGACCAGAGTTCCAACAGAAAAAGGAAAAGCTTCTATACATGCAAGAGGAGGTGAACCGAAGGTACAAGCAATATCATCAACAGATGCAAATAGTATTCTCATCATTTGAGTCAGTAGCAGGTCTTAGTTCTGCTACCCCTTACATACAGGTAGCTCTTAAGACAATCTCTAAACACTTCAAATGTCTGAAGAATGCTATCTCAGAGCAGCTTAAGCATGTTAGACAAATCATGGGAGAGGGATTGACTGCTTCTATGACTGGTACAAATAGTAACAAAGGTGATAATGACATAGCGAGGCTGAGACACATGGATCAAACCTTCCACATGCAGAAAGCTGGTTCATTTAATGCAGGTTTCCTGGAACCCCAACAATCTGTGTGGAAGCCTCAGAGAGGTCTGCCCGAACGTTCTGTGACAATTCTTAGAGCTTGGCTGTTTGAGCATTTTCTGCACCCGTACCCAACTGATACAGATAAACACATGTTAGCTACGCAAACAGGTCTATCGCGAAACCAGGTATCAAATTGGTTTATAAATGCCCGAGTTCGTGTGTGGAAACCTATGGTTGAGGAAATACACATGCTTGAAACCAAAGGCTTGGCAGATGGACGCCAAGACAGCAGCAAGAATATTGGAACAAGTTATGATGACGCCATTTGTGAAGCTAGAGCATATCCTGGTTCAAAGAGATTTGATGGAAATTCCATAGCTGAAAAGCAGTTGCAATGCTCAGGCATGGTATCACCATCCTTGGCTGGTGTTGGGAGCAGGGATGGCCTAAATGCTGAAGCATGGAATCATGAGAAGCGCTCAAAGCTCAATTCTCATATTGCCTCTGATACTGAGGCCTCTTCGATGATTGGTTTTGTGCCTTACCAAGGCAATGAGCTAGAGACTGGGGGACTTGGATCTGTGTCACTGACTTTGGGTCTCAGACATGGTGTTGAAAGTGTGCAGCAGTACCCGCAACAAGAGATACAAGAGGATCAGCTTAGGCGGCAATTTGGAGGTCACATGATTCATGATTTGTAG 2520 0.4321 MSGLRQESHVAQQSRREKLRVLQHGSTSFHHFQDFPTDLQQISTTQDLNSDLLEIRNVRNDNVLYESGYCSSGMMNFSACSNANPSSIQKEAIASPEFLAAQPGRLILSDRFAPFSHSSSANEGNYESHNFGGWKNIDPGTQHTFDSLVNYASEVAGNMNDSDRDCMFVGQGINLSPSYQHYSKTIDNRLQDAHASLSNLSGGVSSQQSHKQLGGLNHIPYATPLYQSTLQDIVKSASASSERGKEIHSLVQRTTREGDSSTCIDSGNELLLLPSYGNQSNMSRYDGTDTWMDRSIESCPQWEGSQARGIVAQMNEHGSPYTASDFNPQRLSLSLSSNPQANKHSAIQPRGESGSVDLQSGIDNSKDPQRLKSSPSGKGCSVVGTSANIGYRSMGPLGPFTGYSTILKNSRFLKSAQQLLDEFCILDGPKLEKTFDVIEINSAIGSASTSADTSNGIDNDASLRENTSGASSSKVCRSSDTRNEVGVASSFHGSFRPEFQQKKEKLLYMQEEVNRRYKQYHQQMQIVFSSFESVAGLSSATPYIQVALKTISKHFKCLKNAISEQLKHVRQIMGEGLTASMTGTNSNKGDNDIARLRHMDQTFHMQKAGSFNAGFLEPQQSVWKPQRGLPERSVTILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGLADGRQDSSKNIGTSYDDAICEARAYPGSKRFDGNSIAEKQLQCSGMVSPSLAGVGSRDGLNAEAWNHEKRSKLNSHIASDTEASSMIGFVPYQGNELETGGLGSVSLTLGLRHGVESVQQYPQQEIQEDQLRRQFGGHMIHDL* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01252 839 SMART HOX_1 623 687 IPR001356 GO:0003677
Pte6g01252 839 ProSiteProfiles 'Homeobox' domain profile. 620 683 IPR001356 GO:0003677
Pte6g01252 839 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 308 700 - -
Pte6g01252 839 MobiDBLite consensus disorder prediction 318 379 - -
Pte6g01252 839 Pfam Homeobox KN domain 640 679 IPR008422 GO:0003677|GO:0006355
Pte6g01252 839 MobiDBLite consensus disorder prediction 447 477 - -
Pte6g01252 839 SMART prehox3 401 564 IPR006563 -
Pte6g01252 839 FunFam BEL1-like homeodomain protein 9 626 688 - -
Pte6g01252 839 Pfam Associated with HOX 406 563 IPR006563 -
Pte6g01252 839 SUPERFAMILY Homeodomain-like 627 689 IPR009057 -
Pte6g01252 839 CDD homeodomain 623 684 IPR001356 GO:0003677
Pte6g01252 839 Gene3D - 626 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01252 Pte-Chr6 30713164 30716843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01252 407 692 Homeobox Transcription Factor Family AT4G34610 46.503 2.25e-71 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pte6g01252 POX 6.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01252 - - vvi:100255350 698.353