Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01248 ATGGGTTTCAGTAATTCACGATCTGTAAAATTCCAGGATGATCTTGAACAAGCGAACAGTCACACAGTTAACGGTGAAAGTGGTGATAAGATCAAATACAACGTTTATGGAACAAAATTTTCTATGGCATCTCCAAACAGTCCTCAGTTGAAGCAAGCTGGGAGGACTAGTAGTTTCCTGAAAACCAGGGTACTGTCAAGAGTGTTCTCAGAAGACTATGACAGAGTTAAGAGAAGAATATTAGATCCCCGTGGACGAACTATACATTGCTGGAACAAGATTTTCCTTGTAGCATGTCTGGTATCTTTGTTTCTGGATCCTCTCTTCTTTTACTTGCCCACTGTCCAAGAAGGAGAGTGCATTGCAATTGGGATAAAGCTAGAAATTAGTCTCACAATTATTAGAACAGTAGCAGATTTCTTTTTCATGTTTCATATTTTCCAAAGGTTTCGTACAGCTTATGTTGCTCCTTCTTCTCGAGTATTTGGGAGAGGGGAGCTTGTCATTGATCCTTCAAAGATTGCAATGAGGTACCTAAGAAAGGGTTTCTTGTTGGACTTAATTGCTTCCCTGCCTCTTCCTCAGGTTTTATTATGGATCATTATACCCAAACTTAAGGGTTTGACAATGGCGAACACAAAAAATGTCCTTCGCTTCGTTATCATTTTCCAGTATCTGCCAAGGCTGTTTCTGATCTTTCCACTTTCCTCACAAATCATAAAGGCTACTGGGGTTGTGACGAAGACAGCTTGGGCAGGAGCTGCTTATAATCTCATCCTTTACATGTTGGCAAGCCATGTTTTAGGAGCTTGCTGGTACCTACTTTCTATTGAGAGGAAAGAATCATGTTGGAGAAGTGTCTGCTTGCTTGAGAACCCATCTTGTCAATTTGGATTCTTCGACTGTTATATGATTCAAAATCCTGCAAGGATATCCTGGTTCAAGACAAGCAACGTGACAGGTTCATGCAAAGCAGATGCTAATTTTTACCAGTTCGGTATATATACTGATGCTGTGAGTTCTGATGTTTTATCTTCACCATTCCTCAATAAATTCTTCTACTGCCTTTGGTGGGGCCTAAAGAATCTGAGTTCTTTGGGGCAAAATCTTTTAGCCACCACTTACGTTGGAGAAATACTTTTTGCTATCATCATCCCCACTCTTGGGTTGGTGCTCTTTGCATTGCTCATCGGCAATATGCAGACTTACCTGCAATCAACAACTGCTCGCTTGGAAGAGTGGAGGGTCAAGAGCACTGACACAGAACAATGGATGCGCCACAGGCAACTACCTCAAGAGTTAAGACAGTCTGTGCGGAAATACAATCAATACAAATGGCTGGCTACTCGAGGAGTCGATGAAGAAGCTCTTCTCAAAGGTCTTCCCATGGACCTGAGGAGAGACATCAAGCGTCATCTCTGCCTGGACCTTGTTCGAAGGGTTCCATTGTTTGATCAAATGGACGAAAGGATGTTAGATGCAATATGTGAGAGGCTAAAACCTGCTTTGTCTACTGAAGGCACCCTATTCGTCCGTGAGGGAGATCCAGTCAATGAGATGCTGTTTATAATTCGGGGCCACCTTGATTCCTACACCAACCATGGTGGGAGCCAAGAATTTTTCAATTCATGCAGAATCGGTCCAGGTGATTTCTGCGGCGAAGAACTACTTACGTGGGCTCTGGATCCAAGACCAAGTATATGTCTTCCTTCTTCTAATAGAACCATAAAAGCTATTTCTGAGGTAGAGGCCTTTGCTCTAATAGCAGAAGACTTGAAGTTTGTTGCATCCCAGTTCAGGAGACTGCATAGCAAACAACTCAGCTACAAGTTTAAGTTTTACTCGCACCAATGGCGGACATGGGCTGCTTGTTTTATACAAGCTGCATGGCGGCGGTACAAGAAAAGAAAGCAAGTGGCTTCATTCAGGGCGTGGGAGAATGTCACGCTTAGTGAGGCTGAAGTCGAAAAGGTGACAAGGAAGCAATCTGATACAGCTGTTTATGCAGCAAGGCTAGCAGGCAACATAAAGAGACAATCTGGCTCAGAATCTGGAGTTGTCAACTCATTGCAGAAGCCAGCAGAGGTACACTTTTCTGACGAGGATTGA 2109 0.431 MGFSNSRSVKFQDDLEQANSHTVNGESGDKIKYNVYGTKFSMASPNSPQLKQAGRTSSFLKTRVLSRVFSEDYDRVKRRILDPRGRTIHCWNKIFLVACLVSLFLDPLFFYLPTVQEGECIAIGIKLEISLTIIRTVADFFFMFHIFQRFRTAYVAPSSRVFGRGELVIDPSKIAMRYLRKGFLLDLIASLPLPQVLLWIIIPKLKGLTMANTKNVLRFVIIFQYLPRLFLIFPLSSQIIKATGVVTKTAWAGAAYNLILYMLASHVLGACWYLLSIERKESCWRSVCLLENPSCQFGFFDCYMIQNPARISWFKTSNVTGSCKADANFYQFGIYTDAVSSDVLSSPFLNKFFYCLWWGLKNLSSLGQNLLATTYVGEILFAIIIPTLGLVLFALLIGNMQTYLQSTTARLEEWRVKSTDTEQWMRHRQLPQELRQSVRKYNQYKWLATRGVDEEALLKGLPMDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTLFVREGDPVNEMLFIIRGHLDSYTNHGGSQEFFNSCRIGPGDFCGEELLTWALDPRPSICLPSSNRTIKAISEVEAFALIAEDLKFVASQFRRLHSKQLSYKFKFYSHQWRTWAACFIQAAWRRYKKRKQVASFRAWENVTLSEAEVEKVTRKQSDTAVYAARLAGNIKRQSGSESGVVNSLQKPAEVHFSDED* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01248 702 SUPERFAMILY Voltage-gated potassium channels 82 405 - -
Pte6g01248 702 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
Pte6g01248 702 SUPERFAMILY cAMP-binding domain-like 412 605 IPR018490 -
Pte6g01248 702 CDD CAP_ED 483 614 IPR000595 -
Pte6g01248 702 Gene3D - 93 407 - -
Pte6g01248 702 Gene3D Helix hairpin bin 409 474 - -
Pte6g01248 702 Gene3D Jelly Rolls 481 601 IPR014710 -
Pte6g01248 702 ProSiteProfiles cAMP/cGMP binding motif profile. 483 566 IPR000595 -
Pte6g01248 702 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 695 - -
Pte6g01248 702 PRINTS EAG/ELK/ERG potassium channel family signature 396 405 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01248 702 PRINTS EAG/ELK/ERG potassium channel family signature 146 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01248 702 PRINTS EAG/ELK/ERG potassium channel family signature 378 389 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01248 702 PRINTS EAG/ELK/ERG potassium channel family signature 446 453 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01248 702 PRINTS EAG/ELK/ERG potassium channel family signature 263 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01248 702 PRINTS EAG/ELK/ERG potassium channel family signature 352 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01248 702 MobiDBLite consensus disorder prediction 679 702 - -
Pte6g01248 702 Pfam Ion transport protein 90 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pte6g01248 702 SMART cnmp_10 483 614 IPR000595 -
Pte6g01248 702 FunFam Cyclic nucleotide-gated ion channel 1 481 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01248 Pte-Chr6 30662019 30665320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01248 57 701 Ion Channels AT2G28260 72.093 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01248 K05391 - qsa:O6P43_000340 1050.81