Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01243 ATGAATAAGTTCTTGGGCTGCTTGCTTTCAGCTTTTATACTGAAACATGACGTATTTTTTCATGTGAAGGGTTCTTGGTACTTTGAGGAGAATTTCGATCGTGTATCAGACGAATTCTTTGATGATGTTGTCAATTTTTTGGACCTCCCTTCAGAAGATATAGAAAAGAATGTTGAAGAAGAAGATTGGAACACTCAATTTCAAAGACTTGGTGAGCCATGCTTCGATATCTTTGCTGTACCAAAACCTGGATTATGTAGCAATACCCTAGATGACTGTTCACTGGCACCCAATAAACCTCTACCTCAGTATAATGATATTGTGAAGCTAAGACAACATCCTGAGGCTAGTGAAGACCACAGCTACAAAAGCATTCTTTGCCATAACAATGAATTAATTGATGTCAAAGATGTACCCATACTCCATATCTATAGTCCAGTTTCTGTATTTGAAAGCAGCAGTTCGTGCTCTGTGGAAAACCCCACCTTTGATCCAGCTATCCCTATAAAGCGTGCAAGGAGCAAGCGCCGACGAATATCAAATTCCAGTCCACTGTTCTCAACATTCATCTTTAGTGTTCCAGCTTTTGAGGACTCGGAGAATCTGGCTGCCTCTGGGTTACAATTGCAAACCCACTCTGGTGTGCTAACTAATGCATCCAAAAAGAGGCAGAGCAAGGAACTGTCCCAAATCTCAGGTCGTATGGAGGTGAAAAGACATGGCAATCAAGATCCACCTGTACCTCGGAAATGCACACATTGTGAGGTGACTAAGACACCACAATGGAGGGAAGGGCCAATGGGTCCGAAGACCCTTTGTAATGCATGTGGAGTTCGTTACAGGTCTGGCCGCCTCTTTCCAGAATACAGACCTGCTGCAAGTCCTACTTTTGTGGCAGCTTTGCATTCGAATTGTCACAAGAAAGTTATAGAGATGAGAAGCAAAGCCAACCAGCAAGCCAGAATTTTATGA 972 0.427 MNKFLGCLLSAFILKHDVFFHVKGSWYFEENFDRVSDEFFDDVVNFLDLPSEDIEKNVEEEDWNTQFQRLGEPCFDIFAVPKPGLCSNTLDDCSLAPNKPLPQYNDIVKLRQHPEASEDHSYKSILCHNNELIDVKDVPILHIYSPVSVFESSSSCSVENPTFDPAIPIKRARSKRRRISNSSPLFSTFIFSVPAFEDSENLAASGLQLQTHSGVLTNASKKRQSKELSQISGRMEVKRHGNQDPPVPRKCTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVAALHSNCHKKVIEMRSKANQQARIL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01243 323 Gene3D - 242 320 IPR013088 GO:0006355|GO:0008270
Pte6g01243 323 PANTHER GATA TRANSCRIPTION FACTOR 50 319 - -
Pte6g01243 323 ProSiteProfiles GATA-type zinc finger domain profile. 249 281 IPR000679 GO:0006355|GO:0043565
Pte6g01243 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 306 - -
Pte6g01243 323 ProSitePatterns GATA-type zinc finger domain. 251 276 IPR000679 GO:0006355|GO:0043565
Pte6g01243 323 SMART GATA_3 245 295 IPR000679 GO:0006355|GO:0043565
Pte6g01243 323 FunFam GATA transcription factor 240 322 - -
Pte6g01243 323 CDD ZnF_GATA 250 297 IPR000679 GO:0006355|GO:0043565
Pte6g01243 323 Pfam GATA zinc finger 251 284 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01243 Pte-Chr6 30619170 30620980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01243 35 319 C2C2-Gata Transcription Factor Family AT1G08010 40.803 1.80e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte6g01243 GATA 9.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01243 - - qsa:O6P43_000334 325.094