Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01240 ATGAAGGAAGCAGAGAAGAGCTTGGATCCTCAACTATGGCATGCTTGTGCTGGAGGTATGGTTCAAATGCCTGCAGTGTACTCTCTAGTTTTCTACTTTCCTCAAGGCCACGCGGAGCACGCAAGAGCCAACGTTGATTTTGCTGCATCACTAAGGATTCCTTCCCTCATTCTGTGCCGAGTTATGGCTGTGAGGTTCTTGGCAGACCACGAAACAGATGAAGTTTACGCTAAGATCAAGCTGATTCCTGTGGGGAACTCAGATTTTGATTACGACGACGATGTACTGGGAGGTAACGGGTCTGAGAATACTAAGAAGACAGCTTCTTTTGCCAAGACATTGACTCAATCCGATGCCAACAATGGTGGCGGTTTCTCGGTTCCAAGGTACTGTGCAGAAACGATCTTTCCCAGGTTGGATTATGCTGCTGATCCACCTGTCCAAACCGTGTTAGCTAAGGACGTTCATGGAGAAATCTGGAAGTTTAGGCATATATACAGAGGGACACCTCGTCGACACCTGCTGACAACTGGCTGGAGCAATTTTGTGAACTACAAGAAACTGGTTGCAGGGGATTCTATTGTGTTCTTGAGAGCGGAAAATGACGATTTATGCTTTGGAATCCGTCGAGCTAAGCGAGGAATTGGATGCGGAGCAGAGTCTCCGTCTGGTTGGAATACCGGTCACGGAAATTGTGTAGGATCTTATGGAGCATTCTCTGCTTATCTTAGGGAGGAGGGTGACAAACTGTTGAGAGATGGTTGTGGAAATTCAGTCCCTGGTGGTGGCAATTTGAAGGTAAGAGGAAAACTGAGACCTGAATCTGTATTGGAAGCAGCAGCCCTCGCTGTAAGTGGCCAGCCTTTTGAAGTTGTGTACTACCCAAGAGCTAGCACTCCGGAGTTCTGCATTAAGGCAGCGTTAGTCAGTGCTGCAATGAGAAGTCAGTGGCGCTCTGGGATGAGGATTAAGATGCCTTTCGAGACTGAGGATTCTTCGCGCATAAGTTGGTTCATGGGCACTGTAGCTTCTGTTCAGGTTGTTGATCCCATCCGTTGGCCTAATTCCCCATGGCGGCTTCTACAGGTGACTTGGGATGAACCAGATTTGCTGCAAAATGTGAAGTGTGTAAGTCCGTGGCTGGTTGAATTGGTAGCTAACGTACCAGTCATGCACCTATCACCCTTCTCTTCTCCTAGAAAGAAGCTGCGGCAACAAAATTCGGATTTCTCCCTGGGCGGACAATTCCTGTTGCCACCATTTTCTGGCAACCCACTTGGACCCATTAATCCCACGTCTTATCTAACAGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGGTCAATTTGGATTATCTTTGTCAGATCTCCACCTTTGCAAGAAACAGCAGATGACACTGCTTCCACCTAGTTTCCAGTGGCTTGAAATGCATTCTGGACATTCCAATTTAAATATGGCAGGTGGTGCAAAGTGTAATGATAGCTTATCTTATTTGTTGAAAGTGGGTAACTCTCCCAAGAGCTTGGAGAAAACTGACAATGCTAAGAAACATGAGTTTTTACTCTTTGGTCAACCAATACTTACAGAGCAAGAAATATATGGAAGCTGTTCTAGTTATCCAGCCTCTGACAATGTTCAGGGAAAAAAACATTCAGATCAAAATAAAGAAAAGTTCTGTTTTGGTAATTCAGCATGCACACTAGAGTATCAAATTCTACCAGGAAAATCATCAAGTACTGAATTCGTAGGTCCGCTTGGGTTAGATGATACTGGCCATTGCAAAGTTTTCCTGGAGTCAGAAGATGTGGGACGCACTCTGGATCTTTCATTGCTCAGTTCCTATGATGAACTGTACACGAGACTGGCCAACATGTTTGAAATGGACAGATCAATGGTTTTGCGCCGTGTGCTCTATCGAGACTCAAATGGTGCTGTTAAGCAGGCTGGTGATGAACCATACGGTGAATTTTTCATGAAGGCCAAGAGATTGACCATTTTGACTGGTTCACGCAGCAATGACATCAGAGGGACATGGATTACAGGACTGCGGAATGGTGAACATGGGTTAGCTGCATCAAACAAAGCAGGTCCTTTGAGCATATTCGCGTAA 2115 0.4582 MKEAEKSLDPQLWHACAGGMVQMPAVYSLVFYFPQGHAEHARANVDFAASLRIPSLILCRVMAVRFLADHETDEVYAKIKLIPVGNSDFDYDDDVLGGNGSENTKKTASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVLAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNYKKLVAGDSIVFLRAENDDLCFGIRRAKRGIGCGAESPSGWNTGHGNCVGSYGAFSAYLREEGDKLLRDGCGNSVPGGGNLKVRGKLRPESVLEAAALAVSGQPFEVVYYPRASTPEFCIKAALVSAAMRSQWRSGMRIKMPFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKCVSPWLVELVANVPVMHLSPFSSPRKKLRQQNSDFSLGGQFLLPPFSGNPLGPINPTSYLTDNAPAGIQGARHGQFGLSLSDLHLCKKQQMTLLPPSFQWLEMHSGHSNLNMAGGAKCNDSLSYLLKVGNSPKSLEKTDNAKKHEFLLFGQPILTEQEIYGSCSSYPASDNVQGKKHSDQNKEKFCFGNSACTLEYQILPGKSSSTEFVGPLGLDDTGHCKVFLESEDVGRTLDLSLLSSYDELYTRLANMFEMDRSMVLRRVLYRDSNGAVKQAGDEPYGEFFMKAKRLTILTGSRSNDIRGTWITGLRNGEHGLAASNKAGPLSIFA* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01240 704 FunFam Auxin response factor 317 390 - -
Pte6g01240 704 CDD B3_DNA 109 210 IPR003340 GO:0003677
Pte6g01240 704 Gene3D - 316 390 - -
Pte6g01240 704 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Pte6g01240 704 Gene3D - 108 212 IPR015300 -
Pte6g01240 704 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte6g01240 704 SUPERFAMILY DNA-binding pseudobarrel domain 103 213 IPR015300 -
Pte6g01240 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte6g01240 704 SMART B3_2 110 212 IPR003340 GO:0003677
Pte6g01240 704 Gene3D - 591 676 - -
Pte6g01240 704 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
Pte6g01240 704 ProSiteProfiles PB1 domain profile. 592 672 IPR000270 GO:0005515
Pte6g01240 704 FunFam Auxin response factor 108 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01240 Pte-Chr6 30607245 30612007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01240 4 676 B3 DNA Binding Superfamily AT4G30080 55.117 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte6g01240 B3 4.8e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01240 - - qsa:O6P43_028379 1053.89