Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01237 ATGGCGATGACTCTGGCTCAGCACAGAGAAAGCAGTAGTGGAAGTATCAACAAGCATCTCGACAACGGAAAATATGTCCGGTACACGGCTGAGCAGGTTGAAGCTCTTGAAAGAGTTTATGCTGAGTGTCCCAAACCGAGCTCGTTGCGGAGGCAACAGTTGATTCGAGAATATCCCATTCTATCCAACATTGAGCCCAAGCAGATAAAAGTTTGGTTTCAGAATCGCAGGTGTAGAGAGAAGCAGCGGAAAGAGGCTTCCCGGCTTCAGACTGTCAACAGAAAACTGAGTGCCATGAACAAAATGTTGATGGAGGAGAATGATCGCTTGCAGAAACAAGTCTCTCAACTAGTCTGTGAGAATGGTTATATGCAGCAACAGTTGCAAACGACACCAGCTGCTACCACCGGAGCAAGCTCTGATTCTGCTGTCACCACTCCTCAGCATTCTTTGAGAGATGTTAACAACCCTGCTGGACTACTCTCAATAGCTGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACTGGAACTGCTGTCGATTGGCTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGAATTTTTGCTATTTCACAAAGATGCAGTGGAGTGGCAGCTCGAGCCTGCGGTCTAGTAAGTTTAGAACCTACGAAGGTGAGCAATGGAAAGTTGAAATCTGTTGTTTTCCACTTTTTGGAGTTGTTTTCTACTGATTCTTGA 729 0.4678 MAMTLAQHRESSSGSINKHLDNGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIREYPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKMLMEENDRLQKQVSQLVCENGYMQQQLQTTPAATTGASSDSAVTTPQHSLRDVNNPAGLLSIAEETLAEFLSKATGTAVDWLQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPTKVSNGKLKSVVFHFLELFSTDS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01237 242 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Pte6g01237 242 CDD bZIP 76 115 - -
Pte6g01237 242 MobiDBLite consensus disorder prediction 1 20 - -
Pte6g01237 242 MobiDBLite consensus disorder prediction 130 151 - -
Pte6g01237 242 MobiDBLite consensus disorder prediction 1 19 - -
Pte6g01237 242 Coils Coil 89 120 - -
Pte6g01237 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 224 IPR044830 GO:0003700
Pte6g01237 242 FunFam Homeobox-leucine zipper protein REVOLUTA 24 79 - -
Pte6g01237 242 Pfam START domain 163 222 IPR002913 GO:0008289
Pte6g01237 242 Gene3D - 17 90 - -
Pte6g01237 242 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Pte6g01237 242 SMART HOX_1 21 87 IPR001356 GO:0003677
Pte6g01237 242 CDD homeodomain 24 84 IPR001356 GO:0003677
Pte6g01237 242 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01237 Pte-Chr6 30579016 30580480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01237 1 223 Homeobox Transcription Factor Family AT5G60690 83.929 7.63e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte6g01237 START 1.3e-07 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01237 K09338 - qsa:O6P43_000330 403.29