Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01226 ATGGCGGCAGCTTCTACTACTCTGAGTCCTCTCTGTGATTCTCAAACCCCTGACCTAAACCCTACTCCTGATCAAATTAACCGCCACGACTCTTCCGACCAATCGCACCCTGCGTCTCACCCGCACCTACACGATCGACCCTCCACGGTTACAGAAACTCCTCAATTAAATGATGATGACATTTCTGGTGAGAAGCGAAAGAGAGAGGACCCAATGCCCGATTCAGGAAATCCTGACACGAATGCGGACTCTCCTCCCTTGCATCCGTTATGGAAGACGAGCCTCTGTTCCTACTTTAGGCGTGAAGGTAGTTCATGCAGTCATGGTAGCGCGTGCAGGTACGCTCACAGTGAAGAGGAGCTCCGTCCCCGACCTGATAACACCTGGGACCCTACTTCCGAGCGGGCTAAAAAGGCCATGAAATCCAACAACGGAGACAGATGGGCTCATGGTGTCACAGAATCTGCTGTCATGATGACAGAGGATGTAGTGGATGAGAAAGAGGATGAGGAGAATGCAAATGGGGATGAAGCTTCTGCTGACGTGGATGATACTAATAATAACGACGATCTCAGAAAATGTCTGATACATTTACCGAGAAAGTGGAGGTCTGAGAATCTGATACAGTTTCTTAATGAACAGAAAGTTTACTTCAAGGTGGCAAAGAAGAAGAAAGGAATGACGGTTGGTTTTGTCAGTTTTGCCGATGATGTGCAATTACAAAGTGCTTTAACTGAGTTGGAGGGAAAATCTATTGGCCGCAAAAACTTGAAGGTTGGAGATGTCATTCCTAGATCATTCGGCAAGAAAGACAATTCTGTGGGTGCTTCCCCCAAAGAAACCCCAAAAGATGTAGATCTTGCATTAACTACAAATGAGGCAGCCAATTTTGCTTCCTCTGATGGAATTGTAGATGGTGATACTAGTAATGAGAGTTTGCCACACGATGGTTCAACTCCAAGGACCAGAAGTGTGCGAGATGTCGTGACTCCTCTAGCCCATATGACTTATCCTGAACAACTTGAGCACAAAAAGAACTCTATTTTGCAAATTCTCAAGAAACTTACTAGAAGTGCTCGGAAAGCTTGTCCACAAGGGGTCTCACTTCCAGAGTGGATTTTGAAATCTAGAGAAATAGGTGGCCTTCCATGCAAACTAGAAGGTATTCTTGGCTCACCAGCTATAAATGGATATCGAAACAAATGTGAATTTTCTGTTGGATATTCTCTGGGAGGAAAATTGACTGTAGGATTTATGCTTGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAAGAACCAGTAGACTGCCCAAATGTTTCAACAATTGCTTGCTGTTATGCTTCTATCTTTCAAGAATTTTTGCAACATTCTCAGTTACCCGTTTGGAACAGATTTAAGAATGTGGGATTTTGGCGCCAACTAACGGTAAGAGAAGGAAGGGCAAATGGTAATGGCGGTACTGATTTTTTGGGAATTGCTGAGGTCATGCTTGTTGTGCAGGTGAGTAGTATGGGCCATGATGATGCATTGGTCGCTTCTGAATTCAAGAAACTTGCTCAAGCATTTGCTGATGGAGCTGCCACACCTACTCCATCTTTGCCACTTACTGCTCTGGTTGTACAGGATCACAAAGGAGTGTCGAATGTAGCTCCAACTGATGCTCCATTGAGTGTTCTTCCCATTCCCGAAGTAATTGAGAATACTGAAGCAGAAAAGAAGAATATGAATGTGGATGCAAGAATCCATGATTATATAAGCAATCTGCGTTTTTGCATATCCCCAACTGCTTTTTTCCAGGTTAACACTCTTGCTGCAGAGAAGCTGTATTCACTTGCTGGGGATTGGGCATGTTTGGGTCATGATACCTTGGTATTTGATATATGTTGTGGAACAGGAACAATTGGGCTGACTTTAGCACATCGCGTCGGAATGGTTATTGGTATTGAAATGAATGCTTCTGCAGTCTCTGATGCTCAAAGGAATGCTGAGATTAATGGCATCAAAAACTGCAGATTTGTTGCTGCAAAGGCAGAGGATGTGATGGGTTCTTTGTTGAGAGAGTACCTTGATGAGAGTCAGACACAAGCAGATACACCCATCTCTGGAATTAATGAAAAAGAAATTATTGCTGATCAGGATAAAGATGGACCACTCAATTCTGCGGAAGGGAGTTCAAGCCATGAGCTTGAAAATGGTAACAGGGCATCTGGATTTTCAGAGAATGTCCATCAAGAAGTCCAAAGTGAGCTTCAAAGGAAAGGCGGTTCAAATAATGTGTTCACACCTGTGCATCGGTTTCAAAATGTTGTTGCTATAATTGATCCTCCACGGGCTGGGCTTCATCCTACGGTGATCAAAGCCCTGAGAACTCATCCACGTCTGCGGAAGCTTGTTTACATATCATGTAATCCTGAAAGCCTAGTCGCAAATGCTATTGAGCTTTGCACGCCATCACCTCTCAAGATAGAGAAAGGCAATAAAGACAACAGGGGATGGAGAAATATGAGCAGTGCTGGTCTAGCACGGCACAGGGTCAAGTCCATGCCCATCTCTGAGCCTTTCCAACCTATCAAAGCCATGGCAGTTGATCTTTTTCCACATACTCAGCATTGTGAAATGGTGATGTTGCTTGAAAGGTAG 2640 0.4428 MAAASTTLSPLCDSQTPDLNPTPDQINRHDSSDQSHPASHPHLHDRPSTVTETPQLNDDDISGEKRKREDPMPDSGNPDTNADSPPLHPLWKTSLCSYFRREGSSCSHGSACRYAHSEEELRPRPDNTWDPTSERAKKAMKSNNGDRWAHGVTESAVMMTEDVVDEKEDEENANGDEASADVDDTNNNDDLRKCLIHLPRKWRSENLIQFLNEQKVYFKVAKKKKGMTVGFVSFADDVQLQSALTELEGKSIGRKNLKVGDVIPRSFGKKDNSVGASPKETPKDVDLALTTNEAANFASSDGIVDGDTSNESLPHDGSTPRTRSVRDVVTPLAHMTYPEQLEHKKNSILQILKKLTRSARKACPQGVSLPEWILKSREIGGLPCKLEGILGSPAINGYRNKCEFSVGYSLGGKLTVGFMLGNFREGVTAVEEPVDCPNVSTIACCYASIFQEFLQHSQLPVWNRFKNVGFWRQLTVREGRANGNGGTDFLGIAEVMLVVQVSSMGHDDALVASEFKKLAQAFADGAATPTPSLPLTALVVQDHKGVSNVAPTDAPLSVLPIPEVIENTEAEKKNMNVDARIHDYISNLRFCISPTAFFQVNTLAAEKLYSLAGDWACLGHDTLVFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAQRNAEINGIKNCRFVAAKAEDVMGSLLREYLDESQTQADTPISGINEKEIIADQDKDGPLNSAEGSSSHELENGNRASGFSENVHQEVQSELQRKGGSNNVFTPVHRFQNVVAIIDPPRAGLHPTVIKALRTHPRLRKLVYISCNPESLVANAIELCTPSPLKIEKGNKDNRGWRNMSSAGLARHRVKSMPISEPFQPIKAMAVDLFPHTQHCEMVMLLER* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01226 879 MobiDBLite consensus disorder prediction 718 735 - -
Pte6g01226 879 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 108 879 IPR045850 -
Pte6g01226 879 SUPERFAMILY CCCH zinc finger 88 123 IPR036855 GO:0046872
Pte6g01226 879 ProSitePatterns RNA methyltransferase trmA family signature 1. 774 806 IPR030390 -
Pte6g01226 879 MobiDBLite consensus disorder prediction 58 74 - -
Pte6g01226 879 MobiDBLite consensus disorder prediction 165 186 - -
Pte6g01226 879 MobiDBLite consensus disorder prediction 711 735 - -
Pte6g01226 879 ProSiteProfiles Zinc finger C3H1-type profile. 90 119 IPR000571 GO:0046872
Pte6g01226 879 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 328 879 IPR010280 GO:0006396|GO:0008173
Pte6g01226 879 MobiDBLite consensus disorder prediction 114 144 - -
Pte6g01226 879 SUPERFAMILY RNA-binding domain, RBD 195 269 IPR035979 GO:0003676
Pte6g01226 879 MobiDBLite consensus disorder prediction 1 28 - -
Pte6g01226 879 CDD AdoMet_MTases 624 680 - -
Pte6g01226 879 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 330 879 IPR029063 -
Pte6g01226 879 Gene3D - 86 124 - -
Pte6g01226 879 MobiDBLite consensus disorder prediction 299 323 - -
Pte6g01226 879 MobiDBLite consensus disorder prediction 1 91 - -
Pte6g01226 879 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 118 IPR000571 GO:0046872
Pte6g01226 879 MobiDBLite consensus disorder prediction 29 47 - -
Pte6g01226 879 MobiDBLite consensus disorder prediction 165 184 - -
Pte6g01226 879 Pfam tRNA (Uracil-5-)-methyltransferase 766 814 IPR010280 GO:0006396|GO:0008173
Pte6g01226 879 SMART c3hfinal6 90 118 IPR000571 GO:0046872
Pte6g01226 879 MobiDBLite consensus disorder prediction 114 147 - -
Pte6g01226 879 Gene3D Vaccinia Virus protein VP39 559 878 IPR029063 -
Pte6g01226 879 Pfam Methyltransferase domain 624 682 IPR025714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01226 Pte-Chr6 30453329 30458716 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte6g01226 tRNA_U5-meth_tr 7.6e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01226 K15332 - qsa:O6P43_028361 1101.27