Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01215 ATGTCTGACCAGCGAGGCCTTTCCATTCCTTCAACAATCGGAGCCTTTGCTCAAGAACAAAATCCAAACCCTATTCCTATTTCTAACCCTAGTTCAAATCCATTCAAGAGGAAGAGAAATTTGCCAGGAAACCCAGATCCAGATGCAGAAGTCATAGCTCTTTCCCCGAAGTCACTCATGGCAACAAACAGATTCATGTGCGATATCTGCAACAAGGGTTTCCAGAGAGACCAGAACTTGCAGCTGCACCGACGTGGACACAACCTTCCATGGAAGCTCAAGCAAAGAAGTAACAAAGAAGTGGTTAGGAAAAAGGTGTACGTATGTCCCGAGAAGACCTGCGTTCATCATGATCCATCCAGAGCCCTTGGAGACCTCACAGGAATAAAGAAACACTACAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGTTCAAAGAAGTATGCAGTTCAGTCTGACTGGAAGGCCCATGGCAAGATTTGTGGGACAAGAGAATACAGATGTGACTGTGGCACACTTTTCTCCAGGAAGGATAGCTTCATTACCCACAGAGCTTTTTGTGATGCTTTGACTGAAGAAAGTACTCGCTTTACTTCAGTTCCAACTGGAGCTTATACTAACTTGAGAAATGAGTTCGTCAATGGGACGATAAATCTTAATCCTCAAATGTCACAAGTTGGGGTTCAAGCTCAATTTGCAGGCTCAGAGCTGCTGGGGAACTTTGTCAATGCAGATGCTCAGCACAAAGCCAGGCTGCCTTTGTGGTTGGAGAATGGAAATTCTCAGCTCAATGCTAATCTATTTGGTGGGATTAATGCATTTTCGTCGGCATCGAGCACAACCAACTTCCCAGATATGGTGCAAACAATGAGTATGTTTGGCCCGTCATCCCAGACAATTCAGTGGCCGAACAGGTATCAAGATGCGACCTATGCAAACGCCGGTAATCTTTCTATGTCAGCAATGCCACATGGACTGAAGGAGGAAGAAGAGAAAAAAACAAGCATGTCTGCAAGTATTGCCTCTTTGTATTCTAATATTAATGGTGCGCAGAGTATTCAACCTGCTCAGAATCACATGTCAGCAACTGCACTCTTGCAGGAAGCAACCCAAATGGGATCTACAAGGAGCAATGAAACCGCCATGAACACCAACAGCGTCTTTGGTTTGGTAGATAGCAATCTATCGAATATGTCCGGAGTCAGCTCTTGCAACGGAAACAACAGATCATATCAAGAGATTCATAAATGTTACCATGCGAACCATGCGTCAGGGAATTCCAACGGTATATTGAACTCTCTACAATCGTCAACTTCCTCAAGCACCACCCATGCTAATATGGAAGATGGTTCTTCGTTAAACGATTATTCCATTTCGGGCGCTTTCCTGAACCCTACCAAGCGCTTCGATTATAATACTGTCATTCAAGGCAATGGCAATAAGCAGCGCAACCAATCAACAGTTATGACAAAGAGACTGCATTCGAACTCAAGCGAAGACCAGAGCAGTATGACTAGAGATTTTCTTGGCGTTGGAGGAGATTCAATGAGCAGGCCACTGTTACCGCAAGAGTTGGCAAAGTTTTCTGCTATGGGTTCTGCAATGGACTTGAGCCAGTACAGTGGACACCACTGA 1644 0.4489 MSDQRGLSIPSTIGAFAQEQNPNPIPISNPSSNPFKRKRNLPGNPDPDAEVIALSPKSLMATNRFMCDICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVVRKKVYVCPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHGKICGTREYRCDCGTLFSRKDSFITHRAFCDALTEESTRFTSVPTGAYTNLRNEFVNGTINLNPQMSQVGVQAQFAGSELLGNFVNADAQHKARLPLWLENGNSQLNANLFGGINAFSSASSTTNFPDMVQTMSMFGPSSQTIQWPNRYQDATYANAGNLSMSAMPHGLKEEEEKKTSMSASIASLYSNINGAQSIQPAQNHMSATALLQEATQMGSTRSNETAMNTNSVFGLVDSNLSNMSGVSSCNGNNRSYQEIHKCYHANHASGNSNGILNSLQSSTSSSTTHANMEDGSSLNDYSISGAFLNPTKRFDYNTVIQGNGNKQRNQSTVMTKRLHSNSSEDQSSMTRDFLGVGGDSMSRPLLPQELAKFSAMGSAMDLSQYSGHH* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01215 547 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Pte6g01215 547 MobiDBLite consensus disorder prediction 1 47 - -
Pte6g01215 547 MobiDBLite consensus disorder prediction 479 519 - -
Pte6g01215 547 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Pte6g01215 547 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Pte6g01215 547 MobiDBLite consensus disorder prediction 432 451 - -
Pte6g01215 547 Gene3D Classic Zinc Finger 61 88 - -
Pte6g01215 547 SMART c2h2final6 65 87 IPR013087 -
Pte6g01215 547 SMART c2h2final6 107 137 IPR013087 -
Pte6g01215 547 Gene3D Classic Zinc Finger 99 190 - -
Pte6g01215 547 MobiDBLite consensus disorder prediction 1 38 - -
Pte6g01215 547 FunFam protein indeterminate-domain 12-like 44 113 - -
Pte6g01215 547 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 526 IPR031140 -
Pte6g01215 547 MobiDBLite consensus disorder prediction 479 508 - -
Pte6g01215 547 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01215 Pte-Chr6 30385078 30388448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01215 36 229 IDZ Gene Family AT3G45260 81.726 4.44e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte6g01215 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01215 K25870 - tcc:18590071 578.941