Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01212 ATGGAAATTGATTTGAACCATGCAGGGAACGAGGTTGAGAAGGCAGTTTGCAATGGTGACTGTGAGCAGAGCTGTTGTGTTTGTGCCTTTTCTTCCTCAACTTCTTCTTGTTCCCACTCATCCTCTGCTCAAATTGCTTCTTACCTGGAGCTCTGGCATGCTTGTGCCGGTCCTCTCACCTCACTGCCTAAGAAAGGGAATATGGTGGTCTACTTCCCACAAGGCCACTTGGAACAAGTTGCTTCCTTCTCTCCGTTCTCCCCCTTGAACATGCCCACCTATGATCTCCAATCACAGATCCTTTGCAGGGTTGTTAATGTCCAGCTACTTGCTAATAAAGAGAATGATGAGGTTTCTATGCAAGTCAGTTTGCTACCCCAATCAGAGTCGCTAGGCACGAGTTTTGAGGGGAAAGAACTGGAACAGTTGGGAGAACAGGAGGATTATATACGAGGATCACCAAACAAACCAAGTTCAACTCCCCACATGTTCTGCAAAACTCTCACAGCTTCCGATACCAGCTCTCATGGAGGGTTCTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTTCTCTGGATTATAAGCAGCTGAGACCCTCTCAAGAACTAATTGCCAAGGATCTGCATGGAACTGAATGGAGATTTCGTCATATTTATAGGGGCCAACCAAGGCGTCATCTTTTGACTACAGGCTGGAGTACTTTTATTAGCCAGAAGAAGCTACTTTCTGGTGATGCAGTGCTTTTTCTGAGAGGCGAAAATGGAGAACTAAGGTTGGGGATAAGAAGAGCTGTTCGACCAAGAAATTGTCTTCCAGAGTCAGTAGTCCACAAACAAATCTCCCATGCTCACGTTCTGTATGCGGTGGCCAATGCAATAGCCAGTAAAAGCATCTTTCATGTATTTTACAGTCCAAGAGCAAGTCATGCAGAGTTTGTTGTGCCCTATGAGAAATATGTCAAAAGCATCAATAGCCCAGCGACCATGGGAGTGAGATTCAAAATGAGAATAAAAAATGACGATACTCCTGAAAGAAGGTGCAGTGGTGTAGTGACAGGCATAGGTGATATAGATCCCTACAGATGGCCCAAATCAAAATGGAGATGCTTGATGGTCAGGTGGGATGAGGATATCAACATTAACCACCAGGAACGAGTTTCTCCTTGGGAGATTGATTCTTCTGCCTCATTGCCTCCACTAGGCATTCAGCCATCTCCAAGATCAAAGAAAATAAGGACAGGAGTTCAGACAACCTCATCCAAAAACCTCATCACTGGTGGTGAGTTTATGGACTTTGAGGAGTCTCTTAGATCCTCCAAGGTCTTGCAAGGTCAAGAAAACGTAAGTTTAGTACTACCCTTTGATGGCGTTGATACAGTCAACCAACAATTGAAGATGGGGATCCCTTCTCCAACCCATCAAGAGTTTATGTCACATGGAGTAAGAAAAGTCGCCATGGATGACTTTTCGAGGGTTCATCCCTCCACACGTGCAGGCTATGTGGAATCAAGTAGAATTCCAGGGGTCTTGCAAGGTCAAGATGTATGCCCTTTGAGATCTTTCTTGGCCCCTACCGAGTTAAGCAGAGGTGCTAGGAAACCATATCTCAGCAACACAACTTTCAACTTGAGCCAAGCAGCAGAATCTGTATATGAGAATTCTCGTAAAGTTGGCAACCGAAGTGTGTGCTCTATTACTGATCTACAAAGGGAAAATGACCCTTCCAATCAGACTTACACTTTGAGAACTGAAGTAGTATGCCAATCAGATCATCCTGATGAACAAGAGCTAGAGGACAGAGGTTCTGCCAGTCCGAGGCGAAACCTCAGAATTCCAAACAATGAAAGTTTTAATGTGAAGATGAAAGGATGCAGACTTTTTGGGATTTCTTTGAATGGTGATGCTGCAAAGCAAACTTTACAGAACTCCTCCAAGAGTTGTGCAAAGGTAACAAAGTGCTAA 1965 0.4468 MEIDLNHAGNEVEKAVCNGDCEQSCCVCAFSSSTSSCSHSSSAQIASYLELWHACAGPLTSLPKKGNMVVYFPQGHLEQVASFSPFSPLNMPTYDLQSQILCRVVNVQLLANKENDEVSMQVSLLPQSESLGTSFEGKELEQLGEQEDYIRGSPNKPSSTPHMFCKTLTASDTSSHGGFSVPRRAAEDCFPSLDYKQLRPSQELIAKDLHGTEWRFRHIYRGQPRRHLLTTGWSTFISQKKLLSGDAVLFLRGENGELRLGIRRAVRPRNCLPESVVHKQISHAHVLYAVANAIASKSIFHVFYSPRASHAEFVVPYEKYVKSINSPATMGVRFKMRIKNDDTPERRCSGVVTGIGDIDPYRWPKSKWRCLMVRWDEDININHQERVSPWEIDSSASLPPLGIQPSPRSKKIRTGVQTTSSKNLITGGEFMDFEESLRSSKVLQGQENVSLVLPFDGVDTVNQQLKMGIPSPTHQEFMSHGVRKVAMDDFSRVHPSTRAGYVESSRIPGVLQGQDVCPLRSFLAPTELSRGARKPYLSNTTFNLSQAAESVYENSRKVGNRSVCSITDLQRENDPSNQTYTLRTEVVCQSDHPDEQELEDRGSASPRRNLRIPNNESFNVKMKGCRLFGISLNGDAAKQTLQNSSKSCAKVTKC* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01212 654 MobiDBLite consensus disorder prediction 592 613 - -
Pte6g01212 654 Gene3D - 162 266 IPR015300 -
Pte6g01212 654 MobiDBLite consensus disorder prediction 592 606 - -
Pte6g01212 654 SUPERFAMILY DNA-binding pseudobarrel domain 156 284 IPR015300 -
Pte6g01212 654 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Pte6g01212 654 CDD B3_DNA 162 264 IPR003340 GO:0003677
Pte6g01212 654 FunFam Auxin response factor 327 399 - -
Pte6g01212 654 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Pte6g01212 654 Gene3D - 328 399 - -
Pte6g01212 654 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 646 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte6g01212 654 MobiDBLite consensus disorder prediction 398 418 - -
Pte6g01212 654 Pfam Auxin response factor 290 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte6g01212 654 SMART B3_2 164 266 IPR003340 GO:0003677
Pte6g01212 654 FunFam Auxin response factor 162 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01212 Pte-Chr6 30356444 30361742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01212 48 653 B3 DNA Binding Superfamily AT5G60450 54.067 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte6g01212 B3 2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01212 - - qsa:O6P43_028348 792.341