Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01207 ATGGCGAGTTCGAATGACTCAGACGACTTTTACTCCCTAGTCTATGAGCAACGCCGCGAGGTCATGGCGGCCGAAGCCGTTGATTCGGATTTCGAGTTTGCATTTCATCTTCAACTTCAAGAAGCCTTAGCTGCCTCCGTGTCTAACCAGCCTTCATCCTCTACCCAAACAATCTCACCGGGGTCCGGAGGCCCTATTCGTGATGACATTCTGAGGTTCACCACCCTTCAGTCTCAGGAGCTCGCCAAACTGGAGCAAGAAATCAAGGATCGGCAGCAGGGTGAGATTGAAATGCGGAAGAGCAGAGAGGATCTCAGTCGTCGGATTCACGACCAGAAGCTTGCGAAGGAGATTCAGGGAATTCCTGAGGATGATTGGAGAGAATGGGGTGATCATTTTGGGAGGCCCTTTGGTGAAGGCTGTTCCAGTTCCAAGGGATTAGAGGATGACGAGGAGGTTCTTTTCAGGCTTTATTTTAAAGGATTGGTGAGTGATGAGAAGTTTAAAGGATTGTTGAGTGATGAGAAGGTTAAGAGGGAGGAGGTTGTGTTGGCGGGAATTGGGGTTGTCATATGTGATCCCAGTGACAATGTGATATTCGAGTTGAAGAAGCCAGGTCTTGTTACCAAGAATAGGACTTTTGCCGAGGGGAAAGCTTTGATCGAAGGGCTTAATGCTGCGTTGGCTTTGGGCTTGAAGCGTGTTATATACCATATTGATTATTATCCGCTTTACCAATTTGTAAGCAGAAGCTGGCCTCCAAAACAGAAGAAAATTGCAACACTACTCAATCAAGTAACCCTGCTTCAACAGAAATTCAAATACTGCAGTCCGAAACTCGTGCCTAGAAATGATGTTAAGTTTGCCTTTAAACTTGCTAGGGAAGCAATTATATTCCAGACCACAGAACCTGCAGAGTCTTGCAATAAAATGAAAACGACTGAGACATGTGTGATTTGTTTGGAAGATACTAGTGGTAGTGAAATGTTCTTAGTTGACGACTGTAAGCATCAGTTTTGCTTCTCTTGTATGAGACAGCATGTGGAGGTGAAGCTGCTTCATGGTATGGTGCCTAGATGCCCTCATGAAGGTTGCAACCGTGAGCTTGTTGTTGAAAGCTGCAGAAAATTTTTGACTCCTAAATCCATAGAAATCATGCAACAGCGCATAAGGGAAGCTTCCATTCCTGTTTCAGAGAAGATTTATTGCCCTTATCCTAGGTGCTCCGCATTAATGTCCAAGAGTGAGGTTTTAGGATGCTCCAGAAGTATGCTCCATGGTTCGAGCGTGAAATGTATAAAATGCCATGCCCTTTTCTGTCTCGACTGCAAAATTCCATGGCATAGTGGCATGACATGTTATGCGTACAGAAGGTTAAATCCCAACCCTCCTGCAGAAGATGTGAAGTTAAAGTCTCTTGCAACAGTGAACCTATGGCGCCAGTGTGTGAAGTGCAACCATATAATCGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGGTGTGGTTATGAGTTTTGCTATAATTGTGGGGCTGAATGGAAAGATAAACGACCTACATGCTCATGTCCACTGTGGGATGAGGACAATATTTTGTATGACGAAGATAGGGACCTGGACGACGAGGGAGAAAGCGAGGATGACTACTATTTCTCTGATTCTTCCGATGAATATGATTTTTTGCGAGTATAA 1692 0.4486 MASSNDSDDFYSLVYEQRREVMAAEAVDSDFEFAFHLQLQEALAASVSNQPSSSTQTISPGSGGPIRDDILRFTTLQSQELAKLEQEIKDRQQGEIEMRKSREDLSRRIHDQKLAKEIQGIPEDDWREWGDHFGRPFGEGCSSSKGLEDDEEVLFRLYFKGLVSDEKFKGLLSDEKVKREEVVLAGIGVVICDPSDNVIFELKKPGLVTKNRTFAEGKALIEGLNAALALGLKRVIYHIDYYPLYQFVSRSWPPKQKKIATLLNQVTLLQQKFKYCSPKLVPRNDVKFAFKLAREAIIFQTTEPAESCNKMKTTETCVICLEDTSGSEMFLVDDCKHQFCFSCMRQHVEVKLLHGMVPRCPHEGCNRELVVESCRKFLTPKSIEIMQQRIREASIPVSEKIYCPYPRCSALMSKSEVLGCSRSMLHGSSVKCIKCHALFCLDCKIPWHSGMTCYAYRRLNPNPPAEDVKLKSLATVNLWRQCVKCNHIIELAEGCYHMTCRCGYEFCYNCGAEWKDKRPTCSCPLWDEDNILYDEDRDLDDEGESEDDYYFSDSSDEYDFLRV* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01207 563 Gene3D - 451 554 - -
Pte6g01207 563 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Pte6g01207 563 Gene3D - 174 300 IPR036397 GO:0003676
Pte6g01207 563 Pfam Reverse transcriptase-like 184 296 IPR002156 GO:0003676|GO:0004523
Pte6g01207 563 FunFam RBR-type E3 ubiquitin transferase 312 397 - -
Pte6g01207 563 Pfam Zinc finger, C3HC4 type (RING finger) 317 361 IPR018957 GO:0046872
Pte6g01207 563 SUPERFAMILY RING/U-box 398 457 - -
Pte6g01207 563 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 272 523 IPR031127 GO:0004842|GO:0016567
Pte6g01207 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 398 IPR013083 -
Pte6g01207 563 ProSiteProfiles TRIAD supradomain profile. 313 527 IPR044066 -
Pte6g01207 563 CDD BRcat_RBR_unk 397 456 - -
Pte6g01207 563 SUPERFAMILY RING/U-box 468 530 - -
Pte6g01207 563 CDD Rcat_RBR_unk 479 514 - -
Pte6g01207 563 SMART ring_2 317 360 IPR001841 -
Pte6g01207 563 FunFam RBR-type E3 ubiquitin transferase 155 300 - -
Pte6g01207 563 ProSiteProfiles Zinc finger RING-type profile. 317 361 IPR001841 -
Pte6g01207 563 SMART ibrneu5 466 523 IPR002867 GO:0008270
Pte6g01207 563 SMART ibrneu5 384 453 IPR002867 GO:0008270
Pte6g01207 563 Pfam IBR domain, a half RING-finger domain 398 453 IPR002867 GO:0008270
Pte6g01207 563 Pfam IBR domain, a half RING-finger domain 474 521 IPR002867 GO:0008270
Pte6g01207 563 SUPERFAMILY RING/U-box 313 396 - -
Pte6g01207 563 FunFam RBR-type E3 ubiquitin transferase 451 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01207 Pte-Chr6 30308195 30311579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01207 155 512 C3H Transcription Factor Family AT2G19610 34.153 5.04e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01207 - - qsu:112024501 709.909