Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01196 ATGTTGGATCTTAATCTCGACGTGGTGGAGAATGAGTCGAATCAACATGATGACTCGACCAGGCCATCTGGTAAATCTCCTGAAGTTCATTCTTGCAACCAAATGGCTGAATCTGGAACTTCCAATTCTTCGATAGTCAATGCTGACGGCTCCAGTAATGGAGTCGGTGACGACGACTCTTGTTCTACACGAGCCACCGGAGACTTCTGCACTCTGAATTTCGGTATCCTGAAAGTGGATGCTGCCCGTGATGTTATGGCGACGAAGGACCTGTTTCCATCGAGTGGTAGTACTGCAAATATAAAGAGAATGGACGGGAATGGTAAAATTTGGCATGGACAGTCTTCATCATCAACGAAGAGCTTGGCTGGTTTCTCGTTCGATCATGGTGGTGGTGGGACGGGTAGCGGAGGTTTGACGATGGTTCGGGTTCAGGTTCAACAACATTTGGCACAACCTCAGCCGCAGCAGCAGGTGAAGAAGAGCAGAAGGGGTCCCAGGTCTCGTAGTTCGCAATACAGAGGAGTGACCTATTACAGGAGGACTGGGAGATGGGAATCGCACATCTGGGATTGTGGGAAACAAGTCTATTTAGGTGGGTTTGACACTGCTCTTGCTGCTGCTAGAGCCTATGATCGAGCAGCCATTAGGTTCAGGGGAGTGGGCGCTGACATCAATTTCAATCTCAGTGATTATGAAGAGGACATGAAGCAGATGAAGAATCTCACAAAGGAGGAATTTGTGCACATACTGCGTCGCCAGAGTACTGGTTTCTCAAGGGGGAGCTCAAAGTATCGAGGAGTGACGCTGCACAAATGTGGGAGATGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCAACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCCATCAAATGGAATGGGAGGGAGGCAGTGACGAACTTTCAGCCAAGTACGTACGAGAGGGAGATGAAACCAGACCAGGGTAATGAAGGTGGCAATTACAATCTTGACCTCAGTCTGAGTATGTCTACATCATTTGGTAATGATCCTAAGGAAAACATGCAGCTTATCGAATTCCAATCTGGGCCTTGTGACTTTCAAAGTGGAACAAGTTCAAGGATTGAAAATAACGCCAATCCATCGGGATTGGATCCAGATCTCAAAGGACTAGTAGTAAGAGAAGGGCAGCCCTCCCTGTGGAATAGTGTGTATCCAGGATTCTTTCCCAATAAGGGAGCAAAGGAAAGAATTACAATAGAGGCTTCACAAGGACTTCCCAACTGGGCATGGCAAAAGCACGGCCAGGTCACTGTCGCCCCAGAACTGTCACCCATGTCAACTGCAGCATCATCAGGATTCTCGTTTGTGGCTCCCTTTCCCTCAAGTTCTTTCCTTCAGCCGAAATCTTCTCATGCAACAGCCAATTATAATATCTGCTTTGCTTCGTCAAATACAGCTGCAACCGCCAACTCTCGGTACTTATACCAGTTGGAATCACCACAAGCACCGCCTTGA 1533 0.4781 MLDLNLDVVENESNQHDDSTRPSGKSPEVHSCNQMAESGTSNSSIVNADGSSNGVGDDDSCSTRATGDFCTLNFGILKVDAARDVMATKDLFPSSGSTANIKRMDGNGKIWHGQSSSSTKSLAGFSFDHGGGGTGSGGLTMVRVQVQQHLAQPQPQQQVKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTALAAARAYDRAAIRFRGVGADINFNLSDYEEDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFNSEVEAARAYDKAAIKWNGREAVTNFQPSTYEREMKPDQGNEGGNYNLDLSLSMSTSFGNDPKENMQLIEFQSGPCDFQSGTSSRIENNANPSGLDPDLKGLVVREGQPSLWNSVYPGFFPNKGAKERITIEASQGLPNWAWQKHGQVTVAPELSPMSTAASSGFSFVAPFPSSSFLQPKSSHATANYNICFASSNTAATANSRYLYQLESPQAPP* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01196 510 FunFam AP2-like ethylene-responsive transcription factor 171 230 - -
Pte6g01196 510 Pfam AP2 domain 172 220 IPR001471 GO:0003700|GO:0006355
Pte6g01196 510 Pfam AP2 domain 263 312 IPR001471 GO:0003700|GO:0006355
Pte6g01196 510 ProSiteProfiles AP2/ERF domain profile. 172 228 IPR001471 GO:0003700|GO:0006355
Pte6g01196 510 SUPERFAMILY DNA-binding domain 263 322 IPR016177 GO:0003677
Pte6g01196 510 MobiDBLite consensus disorder prediction 10 24 - -
Pte6g01196 510 CDD AP2 263 323 IPR001471 GO:0003700|GO:0006355
Pte6g01196 510 SUPERFAMILY DNA-binding domain 171 229 IPR016177 GO:0003677
Pte6g01196 510 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 132 353 - -
Pte6g01196 510 SMART rav1_2 172 234 IPR001471 GO:0003700|GO:0006355
Pte6g01196 510 SMART rav1_2 264 327 IPR001471 GO:0003700|GO:0006355
Pte6g01196 510 ProSiteProfiles AP2/ERF domain profile. 264 321 IPR001471 GO:0003700|GO:0006355
Pte6g01196 510 MobiDBLite consensus disorder prediction 25 60 - -
Pte6g01196 510 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700|GO:0006355
Pte6g01196 510 PRINTS Ethylene responsive element binding protein signature 265 276 IPR001471 GO:0003700|GO:0006355
Pte6g01196 510 MobiDBLite consensus disorder prediction 149 173 - -
Pte6g01196 510 MobiDBLite consensus disorder prediction 1 60 - -
Pte6g01196 510 Gene3D AP2/ERF domain 263 322 IPR036955 GO:0003700|GO:0006355
Pte6g01196 510 Gene3D AP2/ERF domain 171 229 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01196 Pte-Chr6 30166657 30169521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01196 1 511 AP2-EREBP Transcription Factor Family AT5G60120 41.682 6.52e-94 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pte6g01196 AP2 3.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01196 K09284 - zju:107411289 550.051