Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte6g01180 | ATGTCGCCAGCAAAAGTTGATGGTTCAAAAAAAGCTGACCCCAAGGCCCAAGCCTTGAAAGCTGCAAAGGCTATCAAATCTGGCTCTGTTGCCAAGAAGAAGGTTAAGAAAATGCGTACATCTGTCACGTTCCATCGTCCAAGAACATTGAAGAAGGAAAGAAATCCTAAATATCCTCGAATCAGTGCTCCTCCAAGGAACAAGCTTGACCATTATCAGATTCTCAAGTATCCACTGACCACGGAGTCTGCGATGAAGAAAATTGAAGATAATAACACTTTGGTCTTCATTGTTGACTTGCGTGCTGATAAGAAGAAGATCAAGGATGCTGTTAAAAAGATGTATGATATCCAAGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGTACCAAGAAGGCTTATGTGAGATTGGCACCAGATTATGATGCTCTCGACGTTGCAAACAAAATTGGGATAATCTAA | 465 | 0.4151 | MSPAKVDGSKKADPKAQALKAAKAIKSGSVAKKKVKKMRTSVTFHRPRTLKKERNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLAPDYDALDVANKIGII* | 155 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte6g01180 | 154 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 71 | 147 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
Pte6g01180 | 154 | PANTHER | 60S RIBOSOMAL PROTEIN L23A | 7 | 154 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Pte6g01180 | 154 | Gene3D | - | 35 | 154 | IPR012677 | - | |
Pte6g01180 | 154 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Pte6g01180 | 154 | ProSitePatterns | Ribosomal protein L23 signature. | 132 | 147 | IPR001014 | GO:0019843 | |
Pte6g01180 | 154 | NCBIfam | 50S ribosomal protein L23 | 78 | 154 | IPR019985 | GO:0003735|GO:0005840|GO:0006412 | |
Pte6g01180 | 154 | MobiDBLite | consensus disorder prediction | 27 | 45 | - | - | |
Pte6g01180 | 154 | Pfam | Ribosomal protein L23 | 74 | 137 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Pte6g01180 | 154 | FunFam | 60S ribosomal protein L23a | 33 | 154 | - | - | |
Pte6g01180 | 154 | Pfam | Ribosomal protein L23, N-terminal domain | 15 | 64 | IPR005633 | - | |
Pte6g01180 | 154 | Hamap | 50S ribosomal protein L23 [rplW]. | 74 | 154 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte6g01180 | Pte-Chr6 | 30003892 | 30005835 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte6g01180 | 1 | 155 | Cytoplasmic Ribosomal Protein Gene Family | AT2G39460 | 87.097 | 2.27e-69 | 205 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte6g01180 | K02893 | - | qsa:O6P43_031159 | 245.358 |