Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01175 ATGGCGAAAAGACTTGGCTATCAGATCTTTGTTAGCAGGTTATCATCATATACCACTAATGAACATCTGAAGAGGTTGTTTTCTCCGTTTGGGATTGTTAACGAAGCTAAATTAGTGAAAGACCCTAAAACTGGGAGGCCCAAGGGGTTTGGCTTTGTTTCATATGAGACAGAAAGTGAAGCGCAAAAGGCAATTAAAGTCATGAATGGCAGGGTAACTTCTATCTCCATCAGAAAAATTATTCTGTTCATAACATTGTTCAGTTTTGTTTCAGTAGATGAGAATAGTTTCTCTTCCACAGTAATTTCTAACCTAATCGATGATGTAATGGAGTTTAAAATTGTAAGACAAGGTAAATTTGTAGTTATATTTTTTTGTTTTCACCACACTTGA 393 0.3537 MAKRLGYQIFVSRLSSYTTNEHLKRLFSPFGIVNEAKLVKDPKTGRPKGFGFVSYETESEAQKAIKVMNGRVTSISIRKIILFITLFSFVSVDENSFSSTVISNLIDDVMEFKIVRQGKFVVIFFCFHHT* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01175 130 Gene3D - 2 82 IPR012677 -
Pte6g01175 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 80 IPR000504 GO:0003723
Pte6g01175 130 SMART rrm1_1 8 83 IPR000504 GO:0003723
Pte6g01175 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 72 IPR000504 GO:0003723
Pte6g01175 130 SUPERFAMILY RNA-binding domain, RBD 8 72 IPR035979 GO:0003676
Pte6g01175 130 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 6 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01175 Pte-Chr6 29922004 29924995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01175 3 72 Eukaryotic Initiation Factors Gene Family AT1G49760 37.143 1.68e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01175 K13195 - qsu:111988712 116.701